Changes
On April 3, 2024 at 6:38:44 PM UTC,
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Updated description of CRISPR-Dx assays and environmental DNA to monitor amphibians from
# General description This data set was created for the case study on CRISPR-Dx assays to monitor amphibians with eDNA (in the Canton of Aargau, Switzerland). It encompasses a the environmental DNA (eDNA) sampling metadata, the average CRISPR-Dx assay readout per extract, the summarized traditional monitoring data and the permits received for sampling and data usage. **Corresponding author**: Flurin Leugger (flurinleugger@gmail.com) # Description of the zip folders - **CRISPR**: CRISPR-Dx fluorescence readout and summary per extract and eDNA metadata - **traditional_monitoring**: Summarized traditional monitoring data per location, provided by Canton of Aargau
to# General description This data set was created for the case study on CRISPR-Dx assays to monitor amphibians with eDNA (in the Canton of Aargau, Switzerland). It encompasses a the environmental DNA (eDNA) sampling metadata, the average CRISPR-Dx assay readout per extract, the summarized traditional monitoring data and the permits received for sampling and data usage. **Corresponding author**: Flurin Leugger (flurinleugger@gmail.com) # Description of the zip folders - **CRISPR**: CRISPR-Dx fluorescence readout and summary per extract and eDNA metadata - **traditional_monitoring**: Summarized traditional monitoring data per location, provided by Canton of Aargau The permits are provided on request by the authors and are not made available publicly together with the data.
f | 1 | { | f | 1 | { |
2 | "author": "[{\"given_name\": \"Flurin\", \"name\": \"Leugger\", | 2 | "author": "[{\"given_name\": \"Flurin\", \"name\": \"Leugger\", | ||
3 | \"email\": \"flurin.leugger@usys.ethz.ch\", \"data_credit\": [], | 3 | \"email\": \"flurin.leugger@usys.ethz.ch\", \"data_credit\": [], | ||
4 | \"identifier\": \"\", \"affiliation\": \"WSL / ETH\"}, | 4 | \"identifier\": \"\", \"affiliation\": \"WSL / ETH\"}, | ||
5 | {\"given_name\": \"Michel\", \"name\": \"Schmidlin\", \"email\": | 5 | {\"given_name\": \"Michel\", \"name\": \"Schmidlin\", \"email\": | ||
6 | \"michel.schmidlin@usys.ethz.ch\", \"data_credit\": [], | 6 | \"michel.schmidlin@usys.ethz.ch\", \"data_credit\": [], | ||
7 | \"identifier\": \"\", \"affiliation\": \"ETH / WSL\"}, | 7 | \"identifier\": \"\", \"affiliation\": \"ETH / WSL\"}, | ||
8 | {\"given_name\": \"Martina\", \"name\": \"L\\u00fcthi\", \"email\": | 8 | {\"given_name\": \"Martina\", \"name\": \"L\\u00fcthi\", \"email\": | ||
9 | \"martina.luethi@usys.ethz.ch\", \"data_credit\": [], \"identifier\": | 9 | \"martina.luethi@usys.ethz.ch\", \"data_credit\": [], \"identifier\": | ||
10 | \"\", \"affiliation\": \"ETH / WSL\"}, {\"given_name\": \"Zacharias\", | 10 | \"\", \"affiliation\": \"ETH / WSL\"}, {\"given_name\": \"Zacharias\", | ||
11 | \"name\": \"Kontarakis\", \"email\": | 11 | \"name\": \"Kontarakis\", \"email\": | ||
12 | \"zacharias.kontarakis@fgcz.ethz.ch\", \"data_credit\": [], | 12 | \"zacharias.kontarakis@fgcz.ethz.ch\", \"data_credit\": [], | ||
13 | \"identifier\": \"\", \"affiliation\": \"ETH\"}, {\"given_name\": | 13 | \"identifier\": \"\", \"affiliation\": \"ETH\"}, {\"given_name\": | ||
14 | \"Lo\\u00efc\", \"name\": \"Pellissier\", \"email\": | 14 | \"Lo\\u00efc\", \"name\": \"Pellissier\", \"email\": | ||
15 | \"loic.pellissier@usys.ethz.ch\", \"data_credit\": [], \"identifier\": | 15 | \"loic.pellissier@usys.ethz.ch\", \"data_credit\": [], \"identifier\": | ||
16 | \"0000-0002-2289-8259 \", \"affiliation\": \"ETHZ | Department of | 16 | \"0000-0002-2289-8259 \", \"affiliation\": \"ETHZ | Department of | ||
17 | Environmental Systems Science | Institute of Terrestrial Ecosystems | | 17 | Environmental Systems Science | Institute of Terrestrial Ecosystems | | ||
18 | Landscape Ecology\"}]", | 18 | Landscape Ecology\"}]", | ||
19 | "author_email": null, | 19 | "author_email": null, | ||
20 | "creator_user_id": "29b58075-315f-4aa2-bfff-425ea9553e90", | 20 | "creator_user_id": "29b58075-315f-4aa2-bfff-425ea9553e90", | ||
21 | "date": | 21 | "date": | ||
22 | :\"collected\",\"date\":\"2022-05-01\",\"end_date\":\"2022-06-30\"}]", | 22 | :\"collected\",\"date\":\"2022-05-01\",\"end_date\":\"2022-06-30\"}]", | ||
23 | "doi": "10.16904/envidat.499", | 23 | "doi": "10.16904/envidat.499", | ||
24 | "funding": | 24 | "funding": | ||
25 | stitution\":\"WSL\",\"grant_number\":\"\",\"institution_url\":\"\"}]", | 25 | stitution\":\"WSL\",\"grant_number\":\"\",\"institution_url\":\"\"}]", | ||
26 | "groups": [], | 26 | "groups": [], | ||
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28 | "isopen": false, | 28 | "isopen": false, | ||
29 | "license_id": "wsl-data", | 29 | "license_id": "wsl-data", | ||
30 | "license_title": "WSL Data Policy", | 30 | "license_title": "WSL Data Policy", | ||
31 | "license_url": | 31 | "license_url": | ||
32 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | 32 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | ||
33 | "maintainer": | 33 | "maintainer": | ||
34 | ugger@usys.ethz.ch\",\"given_name\":\"Flurin\",\"name\":\"Leugger\"}", | 34 | ugger@usys.ethz.ch\",\"given_name\":\"Flurin\",\"name\":\"Leugger\"}", | ||
35 | "maintainer_email": null, | 35 | "maintainer_email": null, | ||
36 | "metadata_created": "2024-04-02T10:43:13.706095", | 36 | "metadata_created": "2024-04-02T10:43:13.706095", | ||
n | 37 | "metadata_modified": "2024-04-03T12:24:37.537621", | n | 37 | "metadata_modified": "2024-04-03T18:38:44.835896", |
38 | "name": "crispr-dx-assays--amphibians-canton-of-aargau", | 38 | "name": "crispr-dx-assays--amphibians-canton-of-aargau", | ||
39 | "notes": "# General description\n\nThis data set was created for the | 39 | "notes": "# General description\n\nThis data set was created for the | ||
40 | case study on CRISPR-Dx assays to monitor amphibians with eDNA (in the | 40 | case study on CRISPR-Dx assays to monitor amphibians with eDNA (in the | ||
41 | Canton of Aargau, Switzerland). It encompasses a the environmental DNA | 41 | Canton of Aargau, Switzerland). It encompasses a the environmental DNA | ||
42 | (eDNA) sampling metadata, the average CRISPR-Dx assay readout per | 42 | (eDNA) sampling metadata, the average CRISPR-Dx assay readout per | ||
43 | extract, the summarized traditional monitoring data and the permits | 43 | extract, the summarized traditional monitoring data and the permits | ||
44 | received for sampling and data usage.\n\n**Corresponding author**: | 44 | received for sampling and data usage.\n\n**Corresponding author**: | ||
45 | Flurin Leugger (flurinleugger@gmail.com)\n\n# Description of the zip | 45 | Flurin Leugger (flurinleugger@gmail.com)\n\n# Description of the zip | ||
46 | folders\n\n- **CRISPR**: CRISPR-Dx fluorescence readout and summary | 46 | folders\n\n- **CRISPR**: CRISPR-Dx fluorescence readout and summary | ||
47 | per extract and eDNA metadata\n- **traditional_monitoring**: | 47 | per extract and eDNA metadata\n- **traditional_monitoring**: | ||
48 | Summarized traditional monitoring data per location, provided by | 48 | Summarized traditional monitoring data per location, provided by | ||
t | 49 | Canton of Aargau", | t | 49 | Canton of Aargau\n\nThe permits are provided on request by the authors |
50 | and are not made available publicly together with the data.", | ||||
50 | "num_resources": 4, | 51 | "num_resources": 4, | ||
51 | "num_tags": 7, | 52 | "num_tags": 7, | ||
52 | "organization": { | 53 | "organization": { | ||
53 | "approval_status": "approved", | 54 | "approval_status": "approved", | ||
54 | "created": "2018-12-01T11:59:01.791513", | 55 | "created": "2018-12-01T11:59:01.791513", | ||
55 | "description": "We are an international research team with diverse | 56 | "description": "We are an international research team with diverse | ||
56 | scientific expertise and backgrounds, connected by the goal to | 57 | scientific expertise and backgrounds, connected by the goal to | ||
57 | understand biodiversity. We study the mechanisms that shape | 58 | understand biodiversity. We study the mechanisms that shape | ||
58 | biodiversity patterns across spatial and temporal scales - in both | 59 | biodiversity patterns across spatial and temporal scales - in both | ||
59 | terrestrial and aquatic ecosystems -\u200bsuch as mountain ranges and | 60 | terrestrial and aquatic ecosystems -\u200bsuch as mountain ranges and | ||
60 | tropical reefs. We use an interdisciplinary approach, whereby we | 61 | tropical reefs. We use an interdisciplinary approach, whereby we | ||
61 | bridge ecology, evolution, Earth history and global change.\r\nTo make | 62 | bridge ecology, evolution, Earth history and global change.\r\nTo make | ||
62 | these connections, we collect data through biological monitoring, | 63 | these connections, we collect data through biological monitoring, | ||
63 | environmental DNA methods, remote sensing, and field sampling, and use | 64 | environmental DNA methods, remote sensing, and field sampling, and use | ||
64 | these data to answer questions with statistical and | 65 | these data to answer questions with statistical and | ||
65 | process-\u200bbased models of biological diversity.\r\nOur group is | 66 | process-\u200bbased models of biological diversity.\r\nOur group is | ||
66 | affiliated with ETH and WSL, but is also associated with Agroscope, | 67 | affiliated with ETH and WSL, but is also associated with Agroscope, | ||
67 | EAWAG, the European Joint Research Centre and Vogelwarte.", | 68 | EAWAG, the European Joint Research Centre and Vogelwarte.", | ||
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69 | "image_url": | 70 | "image_url": | ||
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71 | "is_organization": true, | 72 | "is_organization": true, | ||
72 | "name": "ele-group", | 73 | "name": "ele-group", | ||
73 | "state": "active", | 74 | "state": "active", | ||
74 | "title": "Ecosystems and Landscape Evolution", | 75 | "title": "Ecosystems and Landscape Evolution", | ||
75 | "type": "organization" | 76 | "type": "organization" | ||
76 | }, | 77 | }, | ||
77 | "owner_org": "153392ee-d556-4b16-a330-dedb177e87f9", | 78 | "owner_org": "153392ee-d556-4b16-a330-dedb177e87f9", | ||
78 | "private": false, | 79 | "private": false, | ||
79 | "publication": | 80 | "publication": | ||
80 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | 81 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | ||
81 | "publication_state": "published", | 82 | "publication_state": "published", | ||
82 | "relationships_as_object": [], | 83 | "relationships_as_object": [], | ||
83 | "relationships_as_subject": [], | 84 | "relationships_as_subject": [], | ||
84 | "resource_type": "dataset", | 85 | "resource_type": "dataset", | ||
85 | "resource_type_general": "dataset", | 86 | "resource_type_general": "dataset", | ||
86 | "resources": [ | 87 | "resources": [ | ||
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195 | "spatial": | 196 | "spatial": | ||
196 | ties\":{\"name\":\"crispr-dx-assays--amphibians-canton-of-aargau\"}}", | 197 | ties\":{\"name\":\"crispr-dx-assays--amphibians-canton-of-aargau\"}}", | ||
197 | "state": "active", | 198 | "state": "active", | ||
198 | "subtitle": "", | 199 | "subtitle": "", | ||
199 | "tags": [ | 200 | "tags": [ | ||
200 | { | 201 | { | ||
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202 | "id": "d88cff32-a882-4411-a059-87e01e2aa42d", | 203 | "id": "d88cff32-a882-4411-a059-87e01e2aa42d", | ||
203 | "name": "AMPHIBIANS", | 204 | "name": "AMPHIBIANS", | ||
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206 | }, | 207 | }, | ||
207 | { | 208 | { | ||
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219 | "vocabulary_id": null | 220 | "vocabulary_id": null | ||
220 | }, | 221 | }, | ||
221 | { | 222 | { | ||
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223 | "id": "0ac3ee66-a65c-4d9a-ad05-b5b4193279da", | 224 | "id": "0ac3ee66-a65c-4d9a-ad05-b5b4193279da", | ||
224 | "name": "BIODIVERSITY MONITORING", | 225 | "name": "BIODIVERSITY MONITORING", | ||
225 | "state": "active", | 226 | "state": "active", | ||
226 | "vocabulary_id": null | 227 | "vocabulary_id": null | ||
227 | }, | 228 | }, | ||
228 | { | 229 | { | ||
229 | "display_name": "CRISPR", | 230 | "display_name": "CRISPR", | ||
230 | "id": "ff8521ab-33f7-41b7-8750-2a6fb3fe54c7", | 231 | "id": "ff8521ab-33f7-41b7-8750-2a6fb3fe54c7", | ||
231 | "name": "CRISPR", | 232 | "name": "CRISPR", | ||
232 | "state": "active", | 233 | "state": "active", | ||
233 | "vocabulary_id": null | 234 | "vocabulary_id": null | ||
234 | }, | 235 | }, | ||
235 | { | 236 | { | ||
236 | "display_name": "ENVIRONMENTAL DNA", | 237 | "display_name": "ENVIRONMENTAL DNA", | ||
237 | "id": "db7d5622-d1fc-4d24-91f7-73842c6743b6", | 238 | "id": "db7d5622-d1fc-4d24-91f7-73842c6743b6", | ||
238 | "name": "ENVIRONMENTAL DNA", | 239 | "name": "ENVIRONMENTAL DNA", | ||
239 | "state": "active", | 240 | "state": "active", | ||
240 | "vocabulary_id": null | 241 | "vocabulary_id": null | ||
241 | }, | 242 | }, | ||
242 | { | 243 | { | ||
243 | "display_name": "MONITORING", | 244 | "display_name": "MONITORING", | ||
244 | "id": "c5b72e0c-e21f-4255-bfac-78d7688e0307", | 245 | "id": "c5b72e0c-e21f-4255-bfac-78d7688e0307", | ||
245 | "name": "MONITORING", | 246 | "name": "MONITORING", | ||
246 | "state": "active", | 247 | "state": "active", | ||
247 | "vocabulary_id": null | 248 | "vocabulary_id": null | ||
248 | } | 249 | } | ||
249 | ], | 250 | ], | ||
250 | "title": "CRISPR-Dx assays and environmental DNA to monitor | 251 | "title": "CRISPR-Dx assays and environmental DNA to monitor | ||
251 | amphibians", | 252 | amphibians", | ||
252 | "type": "dataset", | 253 | "type": "dataset", | ||
253 | "url": null | 254 | "url": null | ||
254 | } | 255 | } |