CRISPR-Dx assays and environmental DNA to monitor amphibians

General description

This data set was created for the case study on CRISPR-Dx assays to monitor amphibians with eDNA (in the Canton of Aargau, Switzerland). It encompasses a the environmental DNA (eDNA) sampling metadata, the average CRISPR-Dx assay readout per extract, the summarized traditional monitoring data and the permits received for sampling and data usage.

Corresponding author: Flurin Leugger (flurinleugger@gmail.com)

Description of the zip folders

  • CRISRP_5km: CRISPR-Dx fluorescence readout and summary per extract and eDNA metadata. The coordinates are provided at 5km resolution (randomly sampled points within 5km buffer around precise location) to meet the agreement with Canton of Aargau.
  • traditional_monitoring: Summarized traditional monitoring data per location, provided by Canton of Aargau
  • CRISPR: CRISPR-Dx fluorescence readout and summary per extract and eDNA metadata. This folder contains the exact sampling coordinates and thus cannot be shared publicly to meet the agreement with Canton of Aargau. It can only be shared upon reasonable request.

  • The permits are provided on request by the authors and are not made available publicly together with the data.

Funding Information:

This work was supported by:
  • SNF (link) (Grant/Award: 40B2-0_203550)
  • WSL

Related Publications

Citation:

Leugger, Flurin; Schmidlin, Michel; Lüthi, Martina; Kontarakis, Zacharias; Pellissier, Loïc (2024). CRISPR-Dx assays and environmental DNA to monitor amphibians. EnviDat. doi:10.16904/envidat.499.

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Data and Resources

Metadata

Field Values
DOI 10.16904/envidat.499
Publication State Published
Authors
  • Email: flurin.leuggerfoo(at)usys.ethz.ch Given Name: Flurin Family Name: Leugger Affiliation: WSL / ETH
  • Email: michel.schmidlinfoo(at)usys.ethz.ch Given Name: Michel Family Name: Schmidlin Affiliation: ETH / WSL
  • Email: martina.luethifoo(at)usys.ethz.ch Given Name: Martina Family Name: Lüthi Affiliation: ETH / WSL
  • Email: zacharias.kontarakisfoo(at)fgcz.ethz.ch Given Name: Zacharias Family Name: Kontarakis Affiliation: ETH
  • Email: loic.pellissierfoo(at)usys.ethz.ch ORCID: 0000-0002-2289-8259 Given Name: Loïc Family Name: Pellissier Affiliation: ETHZ | Department of Environmental Systems Science | Institute of Terrestrial Ecosystems | Landscape Ecology
Contact Person Given Name: Flurin Family Name: Leugger Email: flurin.leuggerfoo(at)usys.ethz.ch
Subtitles
Publication Publisher: EnviDat Year: 2024
Dates
  • Type: Created Date: 2024-04-02 End Date: 2024-04-05
  • Type: Collected Date: 2022-05-01 End Date: 2022-06-30
Version
Type dataset
General Type Dataset
Language
Location
Content License WSL Data Policy
Last Updated November 19, 2024, 11:56 (UTC)
Created April 2, 2024, 10:43 (UTC)