Changes
On May 22, 2024 at 5:51:57 AM UTC, Eric Gehring:
-
Updated description of Presence probability risk maps neophyte Ticino from
943 disturbances in the forest of southern Switzerland have been visited and characterized with various general and specific parameters and the presence absence of woody neophyte species has also been recorded. A Generalized linear regression modelling approach with a binomial family (link function “logit”) was then used to analyse the effects of these parameters on the presence/absence of the six most widespread neophyte species separately (i.e Ailanthus altissima, Buddleja davidii, R. pseudoacacia, Paulownia tomentosa, Prunus laurocerasus, Trachycarpus fortunei). The best model for every species have been used to predict the risk of invasion on a 25 X 25m grid of 1’773’603 million of points covering the entire forest area under 1’500 m a.s.l. Predictions over this new set of points have been computed with the predict function (v4.2.1; R core Team, 2023) and using the best select model for every neophyte species. The resulting prediction are available as a raster tiff. These presence probability risk maps for the forest area of the entire canton Ticino provide a practical tool to be used in combination with the waldmonitoring.ch data allowing to efficiently monitor the spread of woody neophyte species in new disturbances in the forest.
to943 disturbances in the forest of southern Switzerland have been visited and characterized with various general and specific parameters and the presence absence of woody neophyte species has also been recorded. A Generalized linear regression modelling approach with a binomial family (link function “logit”) was then used to analyse the effects of these parameters on the presence/absence of the six most widespread neophyte species separately (i.e Ailanthus altissima, Buddleja davidii, R. pseudoacacia, Paulownia tomentosa, Prunus laurocerasus, Trachycarpus fortunei). If needed, the models were refitted with the spmodel R-package to account for the spatial dependence. The best model for every species have been used to predict the risk of invasion on a 25 X 25m grid of 1’773’603 million of points covering the entire forest area under 1’500 m a.s.l. Predictions over this new set of points have been computed with the predict function (v4.2.1; R core Team, 2023) and using the best select model for every neophyte species. The resulting prediction are available as a raster tiff. These presence probability risk maps for the forest area of the entire canton Ticino provide a practical tool to be used in combination with the waldmonitoring.ch data allowing to efficiently monitor the spread of woody neophyte species in new disturbances in the forest.
f | 1 | { | f | 1 | { |
2 | "author": "[{\"affiliation\": \"Insubric Ecosystem Research Group, | 2 | "author": "[{\"affiliation\": \"Insubric Ecosystem Research Group, | ||
3 | WSL Swiss Federal Research Institute, A Ram\\u00e9l 18, 6593 | 3 | WSL Swiss Federal Research Institute, A Ram\\u00e9l 18, 6593 | ||
4 | Cadenazzo, Switzerland\", \"affiliation_02\": \"\", | 4 | Cadenazzo, Switzerland\", \"affiliation_02\": \"\", | ||
5 | \"affiliation_03\": \"\", \"email\": \"eric.gehring@wsl.ch\", | 5 | \"affiliation_03\": \"\", \"email\": \"eric.gehring@wsl.ch\", | ||
6 | \"given_name\": \"Eric\", \"identifier\": \"0000-0002-4338-540\", | 6 | \"given_name\": \"Eric\", \"identifier\": \"0000-0002-4338-540\", | ||
7 | \"name\": \"Gehring\"}, {\"affiliation\": \"WSL\", \"affiliation_02\": | 7 | \"name\": \"Gehring\"}, {\"affiliation\": \"WSL\", \"affiliation_02\": | ||
8 | \"\", \"affiliation_03\": \"\", \"email\": \"boris.pezzatti@wsl.ch\", | 8 | \"\", \"affiliation_03\": \"\", \"email\": \"boris.pezzatti@wsl.ch\", | ||
9 | \"given_name\": \"Gianni Boris\", \"identifier\": \"\", \"name\": | 9 | \"given_name\": \"Gianni Boris\", \"identifier\": \"\", \"name\": | ||
10 | \"Pezzatti\"}, {\"affiliation\": \"WSL\", \"affiliation_02\": \"\", | 10 | \"Pezzatti\"}, {\"affiliation\": \"WSL\", \"affiliation_02\": \"\", | ||
11 | \"affiliation_03\": \"\", \"email\": \"marco.conedera@wsl.ch\", | 11 | \"affiliation_03\": \"\", \"email\": \"marco.conedera@wsl.ch\", | ||
12 | \"given_name\": \"Marco\", \"identifier\": \"0000-0003-3980-2142\", | 12 | \"given_name\": \"Marco\", \"identifier\": \"0000-0003-3980-2142\", | ||
13 | \"name\": \"Conedera\"}]", | 13 | \"name\": \"Conedera\"}]", | ||
14 | "author_email": null, | 14 | "author_email": null, | ||
15 | "creator_user_id": "aa9555df-cd29-42ee-bad6-6de557eee47c", | 15 | "creator_user_id": "aa9555df-cd29-42ee-bad6-6de557eee47c", | ||
16 | "date": "[{\"date\": \"2022-06-01\", \"date_type\": \"collected\", | 16 | "date": "[{\"date\": \"2022-06-01\", \"date_type\": \"collected\", | ||
17 | \"end_date\": \"2022-10-01\"}]", | 17 | \"end_date\": \"2022-10-01\"}]", | ||
18 | "doi": "10.16904/envidat.392", | 18 | "doi": "10.16904/envidat.392", | ||
19 | "funding": "[{\"grant_number\":\"\",\"institution\":\"WSL, BAFU, | 19 | "funding": "[{\"grant_number\":\"\",\"institution\":\"WSL, BAFU, | ||
20 | Sezione Forestale Cantone Ticino\",\"institution_url\":\"\"}]", | 20 | Sezione Forestale Cantone Ticino\",\"institution_url\":\"\"}]", | ||
21 | "groups": [], | 21 | "groups": [], | ||
22 | "id": "523d7675-93a9-4adf-a03d-883da21f4e91", | 22 | "id": "523d7675-93a9-4adf-a03d-883da21f4e91", | ||
23 | "isopen": false, | 23 | "isopen": false, | ||
24 | "language": "en", | 24 | "language": "en", | ||
25 | "license_id": "wsl-data", | 25 | "license_id": "wsl-data", | ||
26 | "license_title": "WSL Data Policy", | 26 | "license_title": "WSL Data Policy", | ||
27 | "license_url": | 27 | "license_url": | ||
28 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | 28 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | ||
29 | "maintainer": "{\"affiliation\": \"Insubric Ecosystem Research | 29 | "maintainer": "{\"affiliation\": \"Insubric Ecosystem Research | ||
30 | Group, WSL Swiss Federal Research Institute, A Ram\u00e9l 18, 6593 | 30 | Group, WSL Swiss Federal Research Institute, A Ram\u00e9l 18, 6593 | ||
31 | Cadenazzo, Switzerland\", \"email\": \"eric.gehring@wsl.ch\", | 31 | Cadenazzo, Switzerland\", \"email\": \"eric.gehring@wsl.ch\", | ||
32 | \"given_name\": \"Eric\", \"identifier\": \"0000-0002-4338-540\", | 32 | \"given_name\": \"Eric\", \"identifier\": \"0000-0002-4338-540\", | ||
33 | \"name\": \"Gehring\"}", | 33 | \"name\": \"Gehring\"}", | ||
34 | "maintainer_email": null, | 34 | "maintainer_email": null, | ||
35 | "metadata_created": "2023-04-19T09:47:56.712218", | 35 | "metadata_created": "2023-04-19T09:47:56.712218", | ||
n | 36 | "metadata_modified": "2023-05-31T09:24:29.854942", | n | 36 | "metadata_modified": "2024-05-22T05:51:57.559972", |
37 | "name": "neophyte-risk-map-ticino", | 37 | "name": "neophyte-risk-map-ticino", | ||
38 | "notes": "943 disturbances in the forest of southern Switzerland | 38 | "notes": "943 disturbances in the forest of southern Switzerland | ||
39 | have been visited and characterized with various general and specific | 39 | have been visited and characterized with various general and specific | ||
40 | parameters and the presence absence of woody neophyte species has also | 40 | parameters and the presence absence of woody neophyte species has also | ||
n | 41 | been recorded. \r\nA Generalized linear regression modelling approach | n | 41 | been recorded. \nA Generalized linear regression modelling approach |
42 | with a binomial family (link function \u201clogit\u201d) was then used | 42 | with a binomial family (link function \u201clogit\u201d) was then used | ||
43 | to analyse the effects of these parameters on the presence/absence of | 43 | to analyse the effects of these parameters on the presence/absence of | ||
44 | the six most widespread neophyte species separately (i.e Ailanthus | 44 | the six most widespread neophyte species separately (i.e Ailanthus | ||
45 | altissima, Buddleja davidii, R. pseudoacacia, Paulownia tomentosa, | 45 | altissima, Buddleja davidii, R. pseudoacacia, Paulownia tomentosa, | ||
t | 46 | Prunus laurocerasus, Trachycarpus fortunei).\r\n\r\nThe best model for | t | 46 | Prunus laurocerasus, Trachycarpus fortunei). If needed, the models |
47 | every species have been used to predict the risk of invasion on a 25 X | 47 | were refitted with the spmodel R-package to account for the spatial | ||
48 | 25m grid of 1\u2019773\u2019603 million of points covering the entire | 48 | dependence.\nThe best model for every species have been used to | ||
49 | forest area under 1\u2019500 m a.s.l. Predictions over this new set of | 49 | predict the risk of invasion on a 25 X 25m grid of 1\u2019773\u2019603 | ||
50 | points have been computed with the predict function (v4.2.1; R core | 50 | million of points covering the entire forest area under 1\u2019500 m | ||
51 | Team, 2023) and using the best select model for every neophyte | 51 | a.s.l. Predictions over this new set of points have been computed with | ||
52 | species. The resulting prediction are available as a raster tiff. | 52 | the predict function (v4.2.1; R core Team, 2023) and using the best | ||
53 | \r\nThese presence probability risk maps for the forest area of the | 53 | select model for every neophyte species. The resulting prediction are | ||
54 | entire canton Ticino provide a practical tool to be used in | 54 | available as a raster tiff. \nThese presence probability risk maps for | ||
55 | the forest area of the entire canton Ticino provide a practical tool | ||||
55 | combination with the waldmonitoring.ch data allowing to efficiently | 56 | to be used in combination with the waldmonitoring.ch data allowing to | ||
56 | monitor the spread of woody neophyte species in new disturbances in | 57 | efficiently monitor the spread of woody neophyte species in new | ||
57 | the forest.", | 58 | disturbances in the forest.", | ||
58 | "num_resources": 2, | 59 | "num_resources": 2, | ||
59 | "num_tags": 5, | 60 | "num_tags": 5, | ||
60 | "organization": { | 61 | "organization": { | ||
61 | "approval_status": "approved", | 62 | "approval_status": "approved", | ||
62 | "created": "2018-09-11T08:41:19.049947", | 63 | "created": "2018-09-11T08:41:19.049947", | ||
63 | "description": "The name Insubria derives from a pre-Roman | 64 | "description": "The name Insubria derives from a pre-Roman | ||
64 | population occupying the geographical area between the Po River and | 65 | population occupying the geographical area between the Po River and | ||
65 | the Monte Ceneri. In the present time the name is used for indicating | 66 | the Monte Ceneri. In the present time the name is used for indicating | ||
66 | the region extending from Lago d'Orta in the West, to Lago di Garda in | 67 | the region extending from Lago d'Orta in the West, to Lago di Garda in | ||
67 | the East, which is characterized by a mild and wet climate. Due to its | 68 | the East, which is characterized by a mild and wet climate. Due to its | ||
68 | particular biogeographical position, this region does not only host a | 69 | particular biogeographical position, this region does not only host a | ||
69 | highly diverse flora and fauna with important endemisms, but also a | 70 | highly diverse flora and fauna with important endemisms, but also a | ||
70 | great cultural and historical diversity. In the recent past, the area | 71 | great cultural and historical diversity. In the recent past, the area | ||
71 | has been exposed to important socio-cultural changes with dramatic | 72 | has been exposed to important socio-cultural changes with dramatic | ||
72 | effects on the land use and on the cultural and biological diversity | 73 | effects on the land use and on the cultural and biological diversity | ||
73 | in space and time. For these reasons, Insubria can be considered an | 74 | in space and time. For these reasons, Insubria can be considered an | ||
74 | ideal model region to assess the effects of global change on cultural | 75 | ideal model region to assess the effects of global change on cultural | ||
75 | and biotic diversity and ecosystem function.\r\n\r\nThe Insubric | 76 | and biotic diversity and ecosystem function.\r\n\r\nThe Insubric | ||
76 | Ecosystems Group aims understanding the ecological and cultural | 77 | Ecosystems Group aims understanding the ecological and cultural | ||
77 | component of such biogeographic transition regions and their role in | 78 | component of such biogeographic transition regions and their role in | ||
78 | driving biological and cultural diversity. Dynamics and changes are | 79 | driving biological and cultural diversity. Dynamics and changes are | ||
79 | investigated from geo-historical perspectives and at different biotic | 80 | investigated from geo-historical perspectives and at different biotic | ||
80 | levels (from the species, to the population and community composition) | 81 | levels (from the species, to the population and community composition) | ||
81 | and interpreted in the light of different socio-cultural | 82 | and interpreted in the light of different socio-cultural | ||
82 | context.\r\n\r\nMain research topics are the chestnut forests and | 83 | context.\r\n\r\nMain research topics are the chestnut forests and | ||
83 | cultivation, forest fire history and ecology, neophytes, biodiversity | 84 | cultivation, forest fire history and ecology, neophytes, biodiversity | ||
84 | in disturbed and urban ecosystems.", | 85 | in disturbed and urban ecosystems.", | ||
85 | "id": "23509083-845f-43f9-8aae-67cdd2800779", | 86 | "id": "23509083-845f-43f9-8aae-67cdd2800779", | ||
86 | "image_url": "2018-09-11-064425.506670LogoWSL.svg", | 87 | "image_url": "2018-09-11-064425.506670LogoWSL.svg", | ||
87 | "is_organization": true, | 88 | "is_organization": true, | ||
88 | "name": "insubric-ecosystems", | 89 | "name": "insubric-ecosystems", | ||
89 | "state": "active", | 90 | "state": "active", | ||
90 | "title": "Insubric Ecosystems", | 91 | "title": "Insubric Ecosystems", | ||
91 | "type": "organization" | 92 | "type": "organization" | ||
92 | }, | 93 | }, | ||
93 | "owner_org": "23509083-845f-43f9-8aae-67cdd2800779", | 94 | "owner_org": "23509083-845f-43f9-8aae-67cdd2800779", | ||
94 | "private": false, | 95 | "private": false, | ||
95 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | 96 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | ||
96 | \"EnviDat\"}", | 97 | \"EnviDat\"}", | ||
97 | "publication_state": "published", | 98 | "publication_state": "published", | ||
98 | "related_datasets": "", | 99 | "related_datasets": "", | ||
99 | "related_publications": "", | 100 | "related_publications": "", | ||
100 | "relationships_as_object": [], | 101 | "relationships_as_object": [], | ||
101 | "relationships_as_subject": [], | 102 | "relationships_as_subject": [], | ||
102 | "resource_type": "dataset", | 103 | "resource_type": "dataset", | ||
103 | "resource_type_general": "dataset", | 104 | "resource_type_general": "dataset", | ||
104 | "resources": [ | 105 | "resources": [ | ||
105 | { | 106 | { | ||
106 | "cache_last_updated": null, | 107 | "cache_last_updated": null, | ||
107 | "cache_url": null, | 108 | "cache_url": null, | ||
108 | "created": "2023-04-19T09:56:51.177891", | 109 | "created": "2023-04-19T09:56:51.177891", | ||
109 | "description": "Pixel values represent the proability of | 110 | "description": "Pixel values represent the proability of | ||
110 | presence for a given species. 0 = absent, 1 = 100% of presence", | 111 | presence for a given species. 0 = absent, 1 = 100% of presence", | ||
111 | "doi": "", | 112 | "doi": "", | ||
112 | "format": "geotiff", | 113 | "format": "geotiff", | ||
113 | "hash": "", | 114 | "hash": "", | ||
114 | "id": "f0df95e9-0ca4-4023-99e2-43b9b1be6917", | 115 | "id": "f0df95e9-0ca4-4023-99e2-43b9b1be6917", | ||
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118 | "mimetype_inner": null, | 119 | "mimetype_inner": null, | ||
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128 | "size": 52879919, | 129 | "size": 52879919, | ||
129 | "state": "active", | 130 | "state": "active", | ||
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132 | "url_type": "upload" | 133 | "url_type": "upload" | ||
133 | }, | 134 | }, | ||
134 | { | 135 | { | ||
135 | "cache_last_updated": null, | 136 | "cache_last_updated": null, | ||
136 | "cache_url": null, | 137 | "cache_url": null, | ||
137 | "created": "2023-05-31T09:18:19.875383", | 138 | "created": "2023-05-31T09:18:19.875383", | ||
138 | "description": "Some models has been refined. Here are the | 139 | "description": "Some models has been refined. Here are the | ||
139 | updated raster.\nPixel values represent the proability of presence for | 140 | updated raster.\nPixel values represent the proability of presence for | ||
140 | a given species. 0 = absent, 1 = 100% of presence", | 141 | a given species. 0 = absent, 1 = 100% of presence", | ||
141 | "doi": "", | 142 | "doi": "", | ||
142 | "format": "ZIP", | 143 | "format": "ZIP", | ||
143 | "hash": "", | 144 | "hash": "", | ||
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147 | "mimetype": "application/x-zip-compressed", | 148 | "mimetype": "application/x-zip-compressed", | ||
148 | "mimetype_inner": null, | 149 | "mimetype_inner": null, | ||
149 | "name": "neophytes_risk_map_ticinoV2.zip", | 150 | "name": "neophytes_risk_map_ticinoV2.zip", | ||
150 | "package_id": "523d7675-93a9-4adf-a03d-883da21f4e91", | 151 | "package_id": "523d7675-93a9-4adf-a03d-883da21f4e91", | ||
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154 | "restricted": | 155 | "restricted": | ||
155 | {\"level\":\"public\",\"allowed_users\":\"\",\"shared_secret\":\"\"}", | 156 | {\"level\":\"public\",\"allowed_users\":\"\",\"shared_secret\":\"\"}", | ||
156 | "size": 52855473, | 157 | "size": 52855473, | ||
157 | "state": "active", | 158 | "state": "active", | ||
158 | "url": | 159 | "url": | ||
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160 | "url_type": "upload" | 161 | "url_type": "upload" | ||
161 | } | 162 | } | ||
162 | ], | 163 | ], | ||
163 | "spatial": | 164 | "spatial": | ||
164 | 3505859375,46.56059150731364],[8.43475341796875,46.4640341662631]]]}", | 165 | 3505859375,46.56059150731364],[8.43475341796875,46.4640341662631]]]}", | ||
165 | "spatial_info": "Switzerland", | 166 | "spatial_info": "Switzerland", | ||
166 | "state": "active", | 167 | "state": "active", | ||
167 | "subtitle": "", | 168 | "subtitle": "", | ||
168 | "tags": [ | 169 | "tags": [ | ||
169 | { | 170 | { | ||
170 | "display_name": "ANTHROPIC DISTURBANCES", | 171 | "display_name": "ANTHROPIC DISTURBANCES", | ||
171 | "id": "67465216-ccea-4a8f-b6b9-135e8e6b034a", | 172 | "id": "67465216-ccea-4a8f-b6b9-135e8e6b034a", | ||
172 | "name": "ANTHROPIC DISTURBANCES", | 173 | "name": "ANTHROPIC DISTURBANCES", | ||
173 | "state": "active", | 174 | "state": "active", | ||
174 | "vocabulary_id": null | 175 | "vocabulary_id": null | ||
175 | }, | 176 | }, | ||
176 | { | 177 | { | ||
177 | "display_name": "FOREST MONITORING", | 178 | "display_name": "FOREST MONITORING", | ||
178 | "id": "98ca1761-56bb-4814-aa5a-0a524bc03c4c", | 179 | "id": "98ca1761-56bb-4814-aa5a-0a524bc03c4c", | ||
179 | "name": "FOREST MONITORING", | 180 | "name": "FOREST MONITORING", | ||
180 | "state": "active", | 181 | "state": "active", | ||
181 | "vocabulary_id": null | 182 | "vocabulary_id": null | ||
182 | }, | 183 | }, | ||
183 | { | 184 | { | ||
184 | "display_name": "MAPS", | 185 | "display_name": "MAPS", | ||
185 | "id": "9d46f51d-93f0-4516-8b5b-a2ef3c9aa8a8", | 186 | "id": "9d46f51d-93f0-4516-8b5b-a2ef3c9aa8a8", | ||
186 | "name": "MAPS", | 187 | "name": "MAPS", | ||
187 | "state": "active", | 188 | "state": "active", | ||
188 | "vocabulary_id": null | 189 | "vocabulary_id": null | ||
189 | }, | 190 | }, | ||
190 | { | 191 | { | ||
191 | "display_name": "NATURAL DISTURBANCES", | 192 | "display_name": "NATURAL DISTURBANCES", | ||
192 | "id": "5be8aad7-da19-4cb5-88bb-dd10933f8f25", | 193 | "id": "5be8aad7-da19-4cb5-88bb-dd10933f8f25", | ||
193 | "name": "NATURAL DISTURBANCES", | 194 | "name": "NATURAL DISTURBANCES", | ||
194 | "state": "active", | 195 | "state": "active", | ||
195 | "vocabulary_id": null | 196 | "vocabulary_id": null | ||
196 | }, | 197 | }, | ||
197 | { | 198 | { | ||
198 | "display_name": "NEOPHYTES", | 199 | "display_name": "NEOPHYTES", | ||
199 | "id": "8bc61127-5455-4097-a647-fac879f6d9b5", | 200 | "id": "8bc61127-5455-4097-a647-fac879f6d9b5", | ||
200 | "name": "NEOPHYTES", | 201 | "name": "NEOPHYTES", | ||
201 | "state": "active", | 202 | "state": "active", | ||
202 | "vocabulary_id": null | 203 | "vocabulary_id": null | ||
203 | } | 204 | } | ||
204 | ], | 205 | ], | ||
205 | "title": "Presence probability risk maps neophyte Ticino", | 206 | "title": "Presence probability risk maps neophyte Ticino", | ||
206 | "type": "dataset", | 207 | "type": "dataset", | ||
207 | "url": null, | 208 | "url": null, | ||
208 | "version": "1.0" | 209 | "version": "1.0" | ||
209 | } | 210 | } |