Changes
On December 4, 2024 at 1:01:23 PM UTC, Heike Lischke:
-
Added resource TreeMig_Tutorial_v2024_12.pdf to Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics
f | 1 | { | f | 1 | { |
2 | "author": "[{\"given_name\": \"Heike\", \"name\": \"Lischke\", | 2 | "author": "[{\"given_name\": \"Heike\", \"name\": \"Lischke\", | ||
3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | 3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | ||
4 | \"supervision\", \"validation\", \"publication\"], \"identifier\": | 4 | \"supervision\", \"validation\", \"publication\"], \"identifier\": | ||
5 | \"0000-0003-4284-5194\", \"affiliation\": \"WSL\"}, {\"given_name\": | 5 | \"0000-0003-4284-5194\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
6 | \"Dirk\", \"name\": \"Schmatz\", \"email\": \"dirk.schmatz@wsl.ch\", | 6 | \"Dirk\", \"name\": \"Schmatz\", \"email\": \"dirk.schmatz@wsl.ch\", | ||
7 | \"data_credit\": [], \"identifier\": \"0000-0002-8198-6136\", | 7 | \"data_credit\": [], \"identifier\": \"0000-0002-8198-6136\", | ||
8 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Achilleas\", \"name\": | 8 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Achilleas\", \"name\": | ||
9 | \"Psomas\", \"email\": \"achilleas.psomas@wsl.ch\", \"data_credit\": | 9 | \"Psomas\", \"email\": \"achilleas.psomas@wsl.ch\", \"data_credit\": | ||
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11 | \"affiliation\": \"WSL\"}, {\"given_name\": \"David\", \"name\": | 11 | \"affiliation\": \"WSL\"}, {\"given_name\": \"David\", \"name\": | ||
12 | \"B\\u00f6hm\", \"email\": \"boehm@wsl.ch\", \"data_credit\": | 12 | \"B\\u00f6hm\", \"email\": \"boehm@wsl.ch\", \"data_credit\": | ||
13 | [\"validation\", \"publication\"], \"identifier\": \"\", | 13 | [\"validation\", \"publication\"], \"identifier\": \"\", | ||
14 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Daniel\", \"name\": | 14 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Daniel\", \"name\": | ||
15 | \"Scherrer\", \"email\": \"daniel.scherrer@wsl.ch\", \"data_credit\": | 15 | \"Scherrer\", \"email\": \"daniel.scherrer@wsl.ch\", \"data_credit\": | ||
16 | [\"software\", \"supervision\", \"validation\", \"publication\"], | 16 | [\"software\", \"supervision\", \"validation\", \"publication\"], | ||
17 | \"identifier\": \"0000-0001-9983-7510\", \"affiliation\": \"WSL\"}]", | 17 | \"identifier\": \"0000-0001-9983-7510\", \"affiliation\": \"WSL\"}]", | ||
18 | "author_email": null, | 18 | "author_email": null, | ||
19 | "creator_user_id": "ad8596ef-30f6-48c0-8ef8-3644aaa65a32", | 19 | "creator_user_id": "ad8596ef-30f6-48c0-8ef8-3644aaa65a32", | ||
20 | "date": | 20 | "date": | ||
21 | \":\"created\",\"date\":\"2023-06-01\",\"end_date\":\"2024-06-01\"}]", | 21 | \":\"created\",\"date\":\"2023-06-01\",\"end_date\":\"2024-06-01\"}]", | ||
22 | "doi": "10.16904/envidat.533", | 22 | "doi": "10.16904/envidat.533", | ||
23 | "extras": [ | 23 | "extras": [ | ||
24 | { | 24 | { | ||
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27 | } | 27 | } | ||
28 | ], | 28 | ], | ||
29 | "funding": "[{\"institution\":\"WSL internal | 29 | "funding": "[{\"institution\":\"WSL internal | ||
30 | project\",\"grant_number\":\"TreeMig R package and | 30 | project\",\"grant_number\":\"TreeMig R package and | ||
31 | GUI\",\"institution_url\":\"\"},{\"institution\":\"WSL internal | 31 | GUI\",\"institution_url\":\"\"},{\"institution\":\"WSL internal | ||
32 | project\",\"grant_number\":\"WSL Data conversion tool and and | 32 | project\",\"grant_number\":\"WSL Data conversion tool and and | ||
33 | benchmarking data set for spatial forest | 33 | benchmarking data set for spatial forest | ||
34 | models\",\"institution_url\":\"\"}]", | 34 | models\",\"institution_url\":\"\"}]", | ||
35 | "groups": [], | 35 | "groups": [], | ||
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38 | "license_id": "cc-by-sa", | 38 | "license_id": "cc-by-sa", | ||
39 | "license_title": "Creative Commons Attribution Share-Alike | 39 | "license_title": "Creative Commons Attribution Share-Alike | ||
40 | (CC-BY-SA)", | 40 | (CC-BY-SA)", | ||
41 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 41 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
42 | "maintainer": | 42 | "maintainer": | ||
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47 | "name": | 47 | "name": | ||
48 | for-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-", | 48 | for-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-", | ||
49 | "notes": "Starter kit for the [TreeMig framework](treemig.wsl.ch) | 49 | "notes": "Starter kit for the [TreeMig framework](treemig.wsl.ch) | ||
50 | that allows for an easy application of the forest landscape model | 50 | that allows for an easy application of the forest landscape model | ||
51 | TreeMig for simulating forest dynamics in space under changing | 51 | TreeMig for simulating forest dynamics in space under changing | ||
52 | environmental and land use conditions. \n\nThe starter kit consists of | 52 | environmental and land use conditions. \n\nThe starter kit consists of | ||
53 | a set of climate, land-use, topography and soil property input data | 53 | a set of climate, land-use, topography and soil property input data | ||
54 | for Switzerland, a script for installing the framework and running the | 54 | for Switzerland, a script for installing the framework and running the | ||
55 | GUI of the framework with the link to the input data, a tutorial | 55 | GUI of the framework with the link to the input data, a tutorial | ||
56 | covering a range of simulation examples for Switzerland and a transect | 56 | covering a range of simulation examples for Switzerland and a transect | ||
57 | through Europe, and an associated example simulation environment | 57 | through Europe, and an associated example simulation environment | ||
58 | containing the model executables and other model inputs. ", | 58 | containing the model executables and other model inputs. ", | ||
n | 59 | "num_resources": 3, | n | 59 | "num_resources": 4, |
60 | "num_tags": 11, | 60 | "num_tags": 11, | ||
61 | "organization": { | 61 | "organization": { | ||
62 | "approval_status": "approved", | 62 | "approval_status": "approved", | ||
63 | "created": "2018-05-31T14:24:18.890912", | 63 | "created": "2018-05-31T14:24:18.890912", | ||
64 | "description": "The dynamic macroecology group studies different | 64 | "description": "The dynamic macroecology group studies different | ||
65 | aspects of ecology on large spatial and temporal scales, from the | 65 | aspects of ecology on large spatial and temporal scales, from the | ||
66 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | 66 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | ||
67 | species and their traits change in space and time, particularly with | 67 | species and their traits change in space and time, particularly with | ||
68 | global change?\u201d", | 68 | global change?\u201d", | ||
69 | "id": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | 69 | "id": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | ||
70 | "image_url": "", | 70 | "image_url": "", | ||
71 | "is_organization": true, | 71 | "is_organization": true, | ||
72 | "name": "dynamic-macroecology", | 72 | "name": "dynamic-macroecology", | ||
73 | "state": "active", | 73 | "state": "active", | ||
74 | "title": "Dynamic Macroecology", | 74 | "title": "Dynamic Macroecology", | ||
75 | "type": "organization" | 75 | "type": "organization" | ||
76 | }, | 76 | }, | ||
77 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | 77 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | ||
78 | "private": false, | 78 | "private": false, | ||
79 | "publication": | 79 | "publication": | ||
80 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | 80 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | ||
81 | "publication_state": "published", | 81 | "publication_state": "published", | ||
82 | "related_datasets": | 82 | "related_datasets": | ||
83 | factors-slowing-down-upward-shifts-of-trees-upper-elevation-limits\n", | 83 | factors-slowing-down-upward-shifts-of-trees-upper-elevation-limits\n", | ||
84 | "related_publications": | 84 | "related_publications": | ||
85 | %3A23775\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | 85 | %3A23775\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | ||
86 | "relationships_as_object": [], | 86 | "relationships_as_object": [], | ||
87 | "relationships_as_subject": [], | 87 | "relationships_as_subject": [], | ||
88 | "resource_type": "dataset", | 88 | "resource_type": "dataset", | ||
89 | "resource_type_general": "dataset", | 89 | "resource_type_general": "dataset", | ||
90 | "resources": [ | 90 | "resources": [ | ||
91 | { | 91 | { | ||
92 | "cache_last_updated": null, | 92 | "cache_last_updated": null, | ||
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94 | "created": "2024-08-09T09:34:23.252267", | 94 | "created": "2024-08-09T09:34:23.252267", | ||
95 | "description": "Tutorial for using the TreeMig framework ", | 95 | "description": "Tutorial for using the TreeMig framework ", | ||
96 | "doi": "", | 96 | "doi": "", | ||
97 | "format": "PDF", | 97 | "format": "PDF", | ||
98 | "hash": "", | 98 | "hash": "", | ||
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104 | "name": "TreeMig Tutorial", | 104 | "name": "TreeMig Tutorial", | ||
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121 | "description": "Details where the input data come from and how | 121 | "description": "Details where the input data come from and how | ||
122 | they have been processed", | 122 | they have been processed", | ||
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147 | "created": "2024-10-16T08:49:36.787649", | 147 | "created": "2024-10-16T08:49:36.787649", | ||
148 | "description": "The zip file consists of a R-script to provide | 148 | "description": "The zip file consists of a R-script to provide | ||
149 | the framework, an example simulation environment and a set of input | 149 | the framework, an example simulation environment and a set of input | ||
150 | data. \n- The R-script installAndRunTreeMigWrapperAndGUI.R installs | 150 | data. \n- The R-script installAndRunTreeMigWrapperAndGUI.R installs | ||
151 | the R-package, links to the input data and starts the graphical user | 151 | the R-package, links to the input data and starts the graphical user | ||
152 | interface. \n- The gridded input datasets in TMInputData are | 152 | interface. \n- The gridded input datasets in TMInputData are | ||
153 | specifically tailored to Switzerland and have the same coordinate | 153 | specifically tailored to Switzerland and have the same coordinate | ||
154 | reference system and a congruent 200m spatial resolution. They consist | 154 | reference system and a congruent 200m spatial resolution. They consist | ||
155 | of climate, topographic, land use and soil data. For details see | 155 | of climate, topographic, land use and soil data. For details see | ||
156 | TMInputDataDetails.pdf. \n- TMEnvironment is an example simulation | 156 | TMInputDataDetails.pdf. \n- TMEnvironment is an example simulation | ||
157 | environment, i.e. a set of hierarchically structured folders. For the | 157 | environment, i.e. a set of hierarchically structured folders. For the | ||
158 | first example simulation of the tutorial it contains the\n - the | 158 | first example simulation of the tutorial it contains the\n - the | ||
159 | TreeMig executables for MacOS, Linux and Windows\n - simulation | 159 | TreeMig executables for MacOS, Linux and Windows\n - simulation | ||
160 | control files that define the setup and input files of the simulation | 160 | control files that define the setup and input files of the simulation | ||
161 | (in folder C)\n - species parameters (in folder P)\n - bioclimatic | 161 | (in folder C)\n - species parameters (in folder P)\n - bioclimatic | ||
162 | data (in folder E)\n - folder R for results\n - folder Plots for | 162 | data (in folder E)\n - folder R for results\n - folder Plots for | ||
163 | plots of the simulation results.\n - This environment can be also | 163 | plots of the simulation results.\n - This environment can be also | ||
164 | used for the subsequent simulations of the tutorial.\n- Some | 164 | used for the subsequent simulations of the tutorial.\n- Some | ||
165 | additional R-scripts demonstrate more complex applications described | 165 | additional R-scripts demonstrate more complex applications described | ||
166 | in the tutorial, e.g. coupling to another model.\n", | 166 | in the tutorial, e.g. coupling to another model.\n", | ||
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195 | "display_name": "BIOCLIMATIC VARIABLES", | 221 | "display_name": "BIOCLIMATIC VARIABLES", | ||
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213 | "vocabulary_id": null | 239 | "vocabulary_id": null | ||
214 | }, | 240 | }, | ||
215 | { | 241 | { | ||
216 | "display_name": "FOREST MODEL", | 242 | "display_name": "FOREST MODEL", | ||
217 | "id": "3beaeb38-eb88-4bbc-91a9-bf62baf2bb6c", | 243 | "id": "3beaeb38-eb88-4bbc-91a9-bf62baf2bb6c", | ||
218 | "name": "FOREST MODEL", | 244 | "name": "FOREST MODEL", | ||
219 | "state": "active", | 245 | "state": "active", | ||
220 | "vocabulary_id": null | 246 | "vocabulary_id": null | ||
221 | }, | 247 | }, | ||
222 | { | 248 | { | ||
223 | "display_name": "GUI", | 249 | "display_name": "GUI", | ||
224 | "id": "9e2db7e6-faea-4dd0-9346-1a7584e84063", | 250 | "id": "9e2db7e6-faea-4dd0-9346-1a7584e84063", | ||
225 | "name": "GUI", | 251 | "name": "GUI", | ||
226 | "state": "active", | 252 | "state": "active", | ||
227 | "vocabulary_id": null | 253 | "vocabulary_id": null | ||
228 | }, | 254 | }, | ||
229 | { | 255 | { | ||
230 | "display_name": "LAND USE", | 256 | "display_name": "LAND USE", | ||
231 | "id": "4fce8a86-0614-4758-863c-9abc3b68b715", | 257 | "id": "4fce8a86-0614-4758-863c-9abc3b68b715", | ||
232 | "name": "LAND USE", | 258 | "name": "LAND USE", | ||
233 | "state": "active", | 259 | "state": "active", | ||
234 | "vocabulary_id": null | 260 | "vocabulary_id": null | ||
235 | }, | 261 | }, | ||
236 | { | 262 | { | ||
237 | "display_name": "R PACKAGE", | 263 | "display_name": "R PACKAGE", | ||
238 | "id": "3ba3a618-38b0-4788-b795-9836b692b3b3", | 264 | "id": "3ba3a618-38b0-4788-b795-9836b692b3b3", | ||
239 | "name": "R PACKAGE", | 265 | "name": "R PACKAGE", | ||
240 | "state": "active", | 266 | "state": "active", | ||
241 | "vocabulary_id": null | 267 | "vocabulary_id": null | ||
242 | }, | 268 | }, | ||
243 | { | 269 | { | ||
244 | "display_name": "SPATIAL MODELLING", | 270 | "display_name": "SPATIAL MODELLING", | ||
245 | "id": "feb98f97-0e99-4f06-85b0-fe8e5b1c9b9b", | 271 | "id": "feb98f97-0e99-4f06-85b0-fe8e5b1c9b9b", | ||
246 | "name": "SPATIAL MODELLING", | 272 | "name": "SPATIAL MODELLING", | ||
247 | "state": "active", | 273 | "state": "active", | ||
248 | "vocabulary_id": null | 274 | "vocabulary_id": null | ||
249 | }, | 275 | }, | ||
250 | { | 276 | { | ||
251 | "display_name": "SPECIES INTERACTION", | 277 | "display_name": "SPECIES INTERACTION", | ||
252 | "id": "29cd5f4e-ca3f-4e27-a8d5-9550a6a8ffb8", | 278 | "id": "29cd5f4e-ca3f-4e27-a8d5-9550a6a8ffb8", | ||
253 | "name": "SPECIES INTERACTION", | 279 | "name": "SPECIES INTERACTION", | ||
254 | "state": "active", | 280 | "state": "active", | ||
255 | "vocabulary_id": null | 281 | "vocabulary_id": null | ||
256 | }, | 282 | }, | ||
257 | { | 283 | { | ||
258 | "display_name": "SPECIES MIGRATION", | 284 | "display_name": "SPECIES MIGRATION", | ||
259 | "id": "eb823eb5-8de6-435e-8531-a7a27c505418", | 285 | "id": "eb823eb5-8de6-435e-8531-a7a27c505418", | ||
260 | "name": "SPECIES MIGRATION", | 286 | "name": "SPECIES MIGRATION", | ||
261 | "state": "active", | 287 | "state": "active", | ||
262 | "vocabulary_id": null | 288 | "vocabulary_id": null | ||
263 | }, | 289 | }, | ||
264 | { | 290 | { | ||
265 | "display_name": "TREEMIG", | 291 | "display_name": "TREEMIG", | ||
266 | "id": "bd8ace98-a206-4aea-9e29-c75b349287c1", | 292 | "id": "bd8ace98-a206-4aea-9e29-c75b349287c1", | ||
267 | "name": "TREEMIG", | 293 | "name": "TREEMIG", | ||
268 | "state": "active", | 294 | "state": "active", | ||
269 | "vocabulary_id": null | 295 | "vocabulary_id": null | ||
270 | } | 296 | } | ||
271 | ], | 297 | ], | ||
272 | "title": "Starter Kit for the TreeMig framework v1 for easy | 298 | "title": "Starter Kit for the TreeMig framework v1 for easy | ||
273 | simulation of spatio-temporal forest dynamics", | 299 | simulation of spatio-temporal forest dynamics", | ||
274 | "type": "dataset", | 300 | "type": "dataset", | ||
275 | "url": null | 301 | "url": null | ||
276 | } | 302 | } |