Changes
On August 7, 2023 at 6:48:41 AM UTC, Administrator:
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Changed value of field
publication_state
topublished
in Data: Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord
f | 1 | { | f | 1 | { |
2 | "author": "[{\"affiliation\": \"Unit of Land Change Science, Swiss | 2 | "author": "[{\"affiliation\": \"Unit of Land Change Science, Swiss | ||
3 | Federal Research Institute WSL, Birmensdorf, Switzerland\", | 3 | Federal Research Institute WSL, Birmensdorf, Switzerland\", | ||
4 | \"affiliation_02\": \"Ecosystem and Landscape Evolution, Institute of | 4 | \"affiliation_02\": \"Ecosystem and Landscape Evolution, Institute of | ||
5 | Terrestrial Ecosystems, Department of Environmental Systems Science, | 5 | Terrestrial Ecosystems, Department of Environmental Systems Science, | ||
6 | ETH Z\\u00fcrich, Z\\u00fcrich, Switzerland\", \"affiliation_03\": | 6 | ETH Z\\u00fcrich, Z\\u00fcrich, Switzerland\", \"affiliation_03\": | ||
7 | \"\", \"data_credit\": [\"validation\", \"curation\", \"software\", | 7 | \"\", \"data_credit\": [\"validation\", \"curation\", \"software\", | ||
8 | \"publication\"], \"email\": \"virginie.marques@wsl.ch\", | 8 | \"publication\"], \"email\": \"virginie.marques@wsl.ch\", | ||
9 | \"given_name\": \"Virginie\", \"identifier\": \"\", \"name\": | 9 | \"given_name\": \"Virginie\", \"identifier\": \"\", \"name\": | ||
10 | \"Marques\"}, {\"affiliation\": \"Swiss Polar Institute, Ecole | 10 | \"Marques\"}, {\"affiliation\": \"Swiss Polar Institute, Ecole | ||
11 | Polytechnique F\\u00e9d\\u00e9rale de Lausanne, Lausanne, | 11 | Polytechnique F\\u00e9d\\u00e9rale de Lausanne, Lausanne, | ||
12 | Switzerland\", \"affiliation_02\": \"Institute of Earth Sciences, | 12 | Switzerland\", \"affiliation_02\": \"Institute of Earth Sciences, | ||
13 | University of Lausanne, Lausanne, Switzerland\", \"affiliation_03\": | 13 | University of Lausanne, Lausanne, Switzerland\", \"affiliation_03\": | ||
14 | \"\", \"data_credit\": [\"collection\", \"validation\", | 14 | \"\", \"data_credit\": [\"collection\", \"validation\", | ||
15 | \"publication\"], \"email\": \"christelshassler@gmail.com\", | 15 | \"publication\"], \"email\": \"christelshassler@gmail.com\", | ||
16 | \"given_name\": \"Christel\", \"identifier\": \"\", \"name\": | 16 | \"given_name\": \"Christel\", \"identifier\": \"\", \"name\": | ||
17 | \"Hassler\"}, {\"affiliation\": \"Environmental DNA Group, Department | 17 | \"Hassler\"}, {\"affiliation\": \"Environmental DNA Group, Department | ||
18 | of Environmental Systems Science, Swiss Federal Institute of | 18 | of Environmental Systems Science, Swiss Federal Institute of | ||
19 | Technology (ETH) Z\\u00fcrich, Z\\u00fcrich, Switzerland\", | 19 | Technology (ETH) Z\\u00fcrich, Z\\u00fcrich, Switzerland\", | ||
20 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | 20 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | ||
21 | \"collection\", \"email\": \"elias.meier@usys.ethz.ch\", | 21 | \"collection\", \"email\": \"elias.meier@usys.ethz.ch\", | ||
22 | \"given_name\": \"Elias\", \"identifier\": \"\", \"name\": \"Meier\"}, | 22 | \"given_name\": \"Elias\", \"identifier\": \"\", \"name\": \"Meier\"}, | ||
23 | {\"affiliation\": \"Environmental DNA Group, Department of | 23 | {\"affiliation\": \"Environmental DNA Group, Department of | ||
24 | Environmental Systems Science, Swiss Federal Institute of Technology | 24 | Environmental Systems Science, Swiss Federal Institute of Technology | ||
25 | (ETH) Z\\u00fcrich, Z\\u00fcrich, Switzerland\", \"affiliation_02\": | 25 | (ETH) Z\\u00fcrich, Z\\u00fcrich, Switzerland\", \"affiliation_02\": | ||
26 | \"\", \"affiliation_03\": \"\", \"data_credit\": [\"validation\", | 26 | \"\", \"affiliation_03\": \"\", \"data_credit\": [\"validation\", | ||
27 | \"publication\"], \"email\": \"alpinedna@gmail.com\", \"given_name\": | 27 | \"publication\"], \"email\": \"alpinedna@gmail.com\", \"given_name\": | ||
28 | \"Kristy\", \"identifier\": \"\", \"name\": \"Deiner\"}, | 28 | \"Kristy\", \"identifier\": \"\", \"name\": \"Deiner\"}, | ||
29 | {\"affiliation\": \"Unit of Land Change Science, Swiss Federal | 29 | {\"affiliation\": \"Unit of Land Change Science, Swiss Federal | ||
30 | Research Institute WSL, Birmensdorf, Switzerland\", | 30 | Research Institute WSL, Birmensdorf, Switzerland\", | ||
31 | \"affiliation_02\": \"Landscape Ecology, Institute of Terrestrial | 31 | \"affiliation_02\": \"Landscape Ecology, Institute of Terrestrial | ||
32 | Ecosystems, ETH Z\\u00fcrich, 8049 Z\\u00fcrich, Switzerland\", | 32 | Ecosystems, ETH Z\\u00fcrich, 8049 Z\\u00fcrich, Switzerland\", | ||
33 | \"affiliation_03\": \"\", \"data_credit\": [\"publication\", | 33 | \"affiliation_03\": \"\", \"data_credit\": [\"publication\", | ||
34 | \"supervision\"], \"email\": \"albouycamille@gmail.com\", | 34 | \"supervision\"], \"email\": \"albouycamille@gmail.com\", | ||
35 | \"given_name\": \"Camille\", \"identifier\": \"0000-0003-1629-2389\", | 35 | \"given_name\": \"Camille\", \"identifier\": \"0000-0003-1629-2389\", | ||
36 | \"name\": \"Albouy\"}, {\"affiliation\": \"Landscape Ecology, | 36 | \"name\": \"Albouy\"}, {\"affiliation\": \"Landscape Ecology, | ||
37 | Institute of Terrestrial Ecosystems, ETH Z\\u00fcrich, 8049 | 37 | Institute of Terrestrial Ecosystems, ETH Z\\u00fcrich, 8049 | ||
38 | Z\\u00fcrich, Switzerland\", \"affiliation_02\": \"Unit of Land Change | 38 | Z\\u00fcrich, Switzerland\", \"affiliation_02\": \"Unit of Land Change | ||
39 | Science, Swiss Federal Research Institute WSL, Birmensdorf, | 39 | Science, Swiss Federal Research Institute WSL, Birmensdorf, | ||
40 | Switzerland\", \"affiliation_03\": \"\", \"data_credit\": | 40 | Switzerland\", \"affiliation_03\": \"\", \"data_credit\": | ||
41 | [\"publication\", \"supervision\"], \"email\": | 41 | [\"publication\", \"supervision\"], \"email\": | ||
42 | \"loic.pellissier@wsl.ch\", \"given_name\": \"Loic\", \"identifier\": | 42 | \"loic.pellissier@wsl.ch\", \"given_name\": \"Loic\", \"identifier\": | ||
43 | \"0000-0002-2289-8259\", \"name\": \"Pellissier\"}]", | 43 | \"0000-0002-2289-8259\", \"name\": \"Pellissier\"}]", | ||
44 | "author_email": null, | 44 | "author_email": null, | ||
45 | "creator_user_id": "382d8fab-f378-477d-88f6-26f77aee50d8", | 45 | "creator_user_id": "382d8fab-f378-477d-88f6-26f77aee50d8", | ||
46 | "date": "[{\"date\": \"2021-08-03\", \"date_type\": \"collected\", | 46 | "date": "[{\"date\": \"2021-08-03\", \"date_type\": \"collected\", | ||
47 | \"end_date\": \"2021-08-05\"}]", | 47 | \"end_date\": \"2021-08-05\"}]", | ||
48 | "doi": "10.16904/envidat.420", | 48 | "doi": "10.16904/envidat.420", | ||
49 | "funding": "[{\"grant_number\": \"\", \"institution\": \"Swiss Polar | 49 | "funding": "[{\"grant_number\": \"\", \"institution\": \"Swiss Polar | ||
50 | Institute\", \"institution_url\": \"https://swisspolar.ch/\"}]", | 50 | Institute\", \"institution_url\": \"https://swisspolar.ch/\"}]", | ||
51 | "groups": [], | 51 | "groups": [], | ||
52 | "id": "2a7f749a-430f-443b-bbac-073b166c2361", | 52 | "id": "2a7f749a-430f-443b-bbac-073b166c2361", | ||
53 | "isopen": true, | 53 | "isopen": true, | ||
54 | "language": "en", | 54 | "language": "en", | ||
55 | "license_id": "cc-by-sa", | 55 | "license_id": "cc-by-sa", | ||
56 | "license_title": "Creative Commons Attribution Share-Alike | 56 | "license_title": "Creative Commons Attribution Share-Alike | ||
57 | (CC-BY-SA)", | 57 | (CC-BY-SA)", | ||
58 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 58 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
59 | "maintainer": "{\"affiliation\": \"\", \"email\": | 59 | "maintainer": "{\"affiliation\": \"\", \"email\": | ||
60 | \"virginie.marques@wsl.ch\", \"given_name\": \"Virginie\", | 60 | \"virginie.marques@wsl.ch\", \"given_name\": \"Virginie\", | ||
61 | \"identifier\": \"\", \"name\": \"Marques\"}", | 61 | \"identifier\": \"\", \"name\": \"Marques\"}", | ||
62 | "maintainer_email": null, | 62 | "maintainer_email": null, | ||
63 | "metadata_created": "2023-07-14T11:31:44.490738", | 63 | "metadata_created": "2023-07-14T11:31:44.490738", | ||
n | 64 | "metadata_modified": "2023-08-05T12:40:41.663969", | n | 64 | "metadata_modified": "2023-08-07T06:48:41.497973", |
65 | "name": "edna-fjord-svalbard-fish-plankton", | 65 | "name": "edna-fjord-svalbard-fish-plankton", | ||
66 | "notes": "This dataset contains the raw environmental DNA data | 66 | "notes": "This dataset contains the raw environmental DNA data | ||
67 | associated with the publication *Environmental drivers of eukaryotic | 67 | associated with the publication *Environmental drivers of eukaryotic | ||
68 | plankton and fish biodiversity in an Arctic fjord* in the journal | 68 | plankton and fish biodiversity in an Arctic fjord* in the journal | ||
69 | Polar Biology (2023). \r\n\r\n# Methods \r\n \r\n**Sampling**\r\nWe | 69 | Polar Biology (2023). \r\n\r\n# Methods \r\n \r\n**Sampling**\r\nWe | ||
70 | sampled the Lillieh\u00f6\u00f6k fjord on the west coast of | 70 | sampled the Lillieh\u00f6\u00f6k fjord on the west coast of | ||
71 | Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. | 71 | Spitsbergen (Svalbard, Norway) over 3 days from 3 to 5 of August 2021. | ||
72 | Samples were taken from the glacier front up to the fjord mouth of the | 72 | Samples were taken from the glacier front up to the fjord mouth of the | ||
73 | Krossfjorden system, around 30 km long, after the Lillieh\u00f6\u00f6k | 73 | Krossfjorden system, around 30 km long, after the Lillieh\u00f6\u00f6k | ||
74 | fjord merged with the mouth of M\u00f6ller fjord. The fjord\u2019s | 74 | fjord merged with the mouth of M\u00f6ller fjord. The fjord\u2019s | ||
75 | maximum depth has been recorded at 373 m (Svendsen et al. 2002) and | 75 | maximum depth has been recorded at 373 m (Svendsen et al. 2002) and | ||
76 | has no sill at its entrance, thereby facilitating water exchange with | 76 | has no sill at its entrance, thereby facilitating water exchange with | ||
77 | the open ocean of the West Spitsbergen Current. We used a research | 77 | the open ocean of the West Spitsbergen Current. We used a research | ||
78 | vessel to sample 5 sites for a total of 15 samples, sampling 3 depths | 78 | vessel to sample 5 sites for a total of 15 samples, sampling 3 depths | ||
79 | per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was | 79 | per site (3-m, chlorophyll a maximum and 85-m, unless sea floor was | ||
80 | shallower). Shallow and intermediate samples between 3-m and 12-m | 80 | shallower). Shallow and intermediate samples between 3-m and 12-m | ||
81 | represent ~35-L of water filtered in-situ using long tubing and a | 81 | represent ~35-L of water filtered in-situ using long tubing and a | ||
82 | peristaltic pump, and all other deeper samples were taken from a total | 82 | peristaltic pump, and all other deeper samples were taken from a total | ||
83 | of 3 Niskin bottles (General Oceanics), representing 22-L of water | 83 | of 3 Niskin bottles (General Oceanics), representing 22-L of water | ||
84 | sampled per sample. Water was filtered through a VigiDNA filtration | 84 | sampled per sample. Water was filtered through a VigiDNA filtration | ||
85 | capsule (SPYGEN) with a 0.20-\u00b5m pore size using an Athena | 85 | capsule (SPYGEN) with a 0.20-\u00b5m pore size using an Athena | ||
86 | peristaltic pump (Proactive Environmental Products, Bradenton, | 86 | peristaltic pump (Proactive Environmental Products, Bradenton, | ||
87 | Florida) with a flow rate of ~1-L/min. Each sample was handled with | 87 | Florida) with a flow rate of ~1-L/min. Each sample was handled with | ||
88 | single use tubing and gloves. \r\n\r\n**Molecular**\r\nTo perform the | 88 | single use tubing and gloves. \r\n\r\n**Molecular**\r\nTo perform the | ||
89 | amplification, we used two sets of primers: teleo (forward: | 89 | amplification, we used two sets of primers: teleo (forward: | ||
90 | ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. | 90 | ACACCGCCCGTCACTCT, reverse: CTTCCGGTACACTTACCATG; Valentini et al. | ||
91 | 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying | 91 | 2016) and the universal eukaryotic 1389F/1510R primer pair, amplifying | ||
92 | the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: | 92 | the V9-18S rDNA gene (Amaral-Zettler et al. 2009) (forward: | ||
93 | TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC). \r\n\r\n# Data | 93 | TTGTACACACCGCCC, reverse: CCTTCYGCAGGTTCACCTAC). \r\n\r\n# Data | ||
94 | content: \r\n\r\n+ Metabarcoding data: This zip file contains the 2 | 94 | content: \r\n\r\n+ Metabarcoding data: This zip file contains the 2 | ||
95 | sequencing libraries filtered to only retain the samples used in the | 95 | sequencing libraries filtered to only retain the samples used in the | ||
96 | present study. \r\n+ Code, data and figure: This zip file contains all | 96 | present study. \r\n+ Code, data and figure: This zip file contains all | ||
97 | data and code to reproduce the figures and the analysis in the study, | 97 | data and code to reproduce the figures and the analysis in the study, | ||
98 | with an associated README explaining the content of each folder. | 98 | with an associated README explaining the content of each folder. | ||
99 | \r\n\r\n# Additional informations\r\nFor more details, please see the | 99 | \r\n\r\n# Additional informations\r\nFor more details, please see the | ||
100 | Methods in the associated publication: DOI: | 100 | Methods in the associated publication: DOI: | ||
101 | 10.1007/s00300-023-03187-9. ", | 101 | 10.1007/s00300-023-03187-9. ", | ||
102 | "num_resources": 2, | 102 | "num_resources": 2, | ||
103 | "num_tags": 7, | 103 | "num_tags": 7, | ||
104 | "organization": { | 104 | "organization": { | ||
105 | "approval_status": "approved", | 105 | "approval_status": "approved", | ||
106 | "created": "2018-12-01T11:59:01.791513", | 106 | "created": "2018-12-01T11:59:01.791513", | ||
107 | "description": "Our laboratory aims at understanding and | 107 | "description": "Our laboratory aims at understanding and | ||
108 | forecasting the response of biodiversity to landscape changes. We | 108 | forecasting the response of biodiversity to landscape changes. We | ||
109 | investigate the historical responses of species to past changes such | 109 | investigate the historical responses of species to past changes such | ||
110 | as plate tectonics or the glaciations of the Quaternary and | 110 | as plate tectonics or the glaciations of the Quaternary and | ||
111 | contemporary responses to ongoing global changes. We develop spatial | 111 | contemporary responses to ongoing global changes. We develop spatial | ||
112 | mechanistic models of biodiversity that account for processes such as | 112 | mechanistic models of biodiversity that account for processes such as | ||
113 | dispersal and biotic interactions.", | 113 | dispersal and biotic interactions.", | ||
114 | "id": "153392ee-d556-4b16-a330-dedb177e87f9", | 114 | "id": "153392ee-d556-4b16-a330-dedb177e87f9", | ||
115 | "image_url": "2018-12-01-105921.8275952000px-LogoWSL.svg.png", | 115 | "image_url": "2018-12-01-105921.8275952000px-LogoWSL.svg.png", | ||
116 | "is_organization": true, | 116 | "is_organization": true, | ||
117 | "name": "ele-group", | 117 | "name": "ele-group", | ||
118 | "state": "active", | 118 | "state": "active", | ||
119 | "title": "Ecosystems and Landscape Evolution", | 119 | "title": "Ecosystems and Landscape Evolution", | ||
120 | "type": "organization" | 120 | "type": "organization" | ||
121 | }, | 121 | }, | ||
122 | "owner_org": "153392ee-d556-4b16-a330-dedb177e87f9", | 122 | "owner_org": "153392ee-d556-4b16-a330-dedb177e87f9", | ||
123 | "private": false, | 123 | "private": false, | ||
124 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | 124 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | ||
125 | \"EnviDat\"}", | 125 | \"EnviDat\"}", | ||
t | 126 | "publication_state": "approved", | t | 126 | "publication_state": "published", |
127 | "related_datasets": "", | 127 | "related_datasets": "", | ||
128 | "related_publications": | 128 | "related_publications": | ||
129 | "https://link.springer.com/article/10.1007/s00300-023-03187-9, DOI: | 129 | "https://link.springer.com/article/10.1007/s00300-023-03187-9, DOI: | ||
130 | 10.1007/s00300-023-03187-9", | 130 | 10.1007/s00300-023-03187-9", | ||
131 | "relationships_as_object": [], | 131 | "relationships_as_object": [], | ||
132 | "relationships_as_subject": [], | 132 | "relationships_as_subject": [], | ||
133 | "resource_type": "dataset", | 133 | "resource_type": "dataset", | ||
134 | "resource_type_general": "dataset", | 134 | "resource_type_general": "dataset", | ||
135 | "resources": [ | 135 | "resources": [ | ||
136 | { | 136 | { | ||
137 | "cache_last_updated": null, | 137 | "cache_last_updated": null, | ||
138 | "cache_url": null, | 138 | "cache_url": null, | ||
139 | "created": "2023-07-14T11:31:49.659114", | 139 | "created": "2023-07-14T11:31:49.659114", | ||
140 | "description": "Raw demultiplexed metabarcoding data for both | 140 | "description": "Raw demultiplexed metabarcoding data for both | ||
141 | primers (teleo and 18S) and corresponding file to perform the | 141 | primers (teleo and 18S) and corresponding file to perform the | ||
142 | demultiplexing and primer trimming", | 142 | demultiplexing and primer trimming", | ||
143 | "doi": "", | 143 | "doi": "", | ||
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167 | "cache_last_updated": null, | 167 | "cache_last_updated": null, | ||
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169 | "created": "2023-08-04T14:56:38.870010", | 169 | "created": "2023-08-04T14:56:38.870010", | ||
170 | "description": "Here there are all the data and code to | 170 | "description": "Here there are all the data and code to | ||
171 | reproduce the figures and analysis presented in the paper, with a | 171 | reproduce the figures and analysis presented in the paper, with a | ||
172 | README.md file ", | 172 | README.md file ", | ||
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198 | "spatial_info": "Svalbard", | 198 | "spatial_info": "Svalbard", | ||
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200 | "subtitle": "", | 200 | "subtitle": "", | ||
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209 | { | 209 | { | ||
210 | "display_name": "DNA METABARCODING", | 210 | "display_name": "DNA METABARCODING", | ||
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216 | { | 216 | { | ||
217 | "display_name": "ENVIRONMENTAL DNA", | 217 | "display_name": "ENVIRONMENTAL DNA", | ||
218 | "id": "db7d5622-d1fc-4d24-91f7-73842c6743b6", | 218 | "id": "db7d5622-d1fc-4d24-91f7-73842c6743b6", | ||
219 | "name": "ENVIRONMENTAL DNA", | 219 | "name": "ENVIRONMENTAL DNA", | ||
220 | "state": "active", | 220 | "state": "active", | ||
221 | "vocabulary_id": null | 221 | "vocabulary_id": null | ||
222 | }, | 222 | }, | ||
223 | { | 223 | { | ||
224 | "display_name": "FISH", | 224 | "display_name": "FISH", | ||
225 | "id": "2c02ff6e-73a8-46b2-895d-7b0080f5773f", | 225 | "id": "2c02ff6e-73a8-46b2-895d-7b0080f5773f", | ||
226 | "name": "FISH", | 226 | "name": "FISH", | ||
227 | "state": "active", | 227 | "state": "active", | ||
228 | "vocabulary_id": null | 228 | "vocabulary_id": null | ||
229 | }, | 229 | }, | ||
230 | { | 230 | { | ||
231 | "display_name": "FJORD", | 231 | "display_name": "FJORD", | ||
232 | "id": "cc15aab8-31d3-4b5e-bff9-967186f33283", | 232 | "id": "cc15aab8-31d3-4b5e-bff9-967186f33283", | ||
233 | "name": "FJORD", | 233 | "name": "FJORD", | ||
234 | "state": "active", | 234 | "state": "active", | ||
235 | "vocabulary_id": null | 235 | "vocabulary_id": null | ||
236 | }, | 236 | }, | ||
237 | { | 237 | { | ||
238 | "display_name": "MARINE", | 238 | "display_name": "MARINE", | ||
239 | "id": "1f05d702-5580-40ac-9c9a-47127e050fa7", | 239 | "id": "1f05d702-5580-40ac-9c9a-47127e050fa7", | ||
240 | "name": "MARINE", | 240 | "name": "MARINE", | ||
241 | "state": "active", | 241 | "state": "active", | ||
242 | "vocabulary_id": null | 242 | "vocabulary_id": null | ||
243 | }, | 243 | }, | ||
244 | { | 244 | { | ||
245 | "display_name": "PLANKTON", | 245 | "display_name": "PLANKTON", | ||
246 | "id": "2d40a965-5947-4202-9b03-59e510debb36", | 246 | "id": "2d40a965-5947-4202-9b03-59e510debb36", | ||
247 | "name": "PLANKTON", | 247 | "name": "PLANKTON", | ||
248 | "state": "active", | 248 | "state": "active", | ||
249 | "vocabulary_id": null | 249 | "vocabulary_id": null | ||
250 | } | 250 | } | ||
251 | ], | 251 | ], | ||
252 | "title": "Data: Environmental drivers of eukaryotic plankton and | 252 | "title": "Data: Environmental drivers of eukaryotic plankton and | ||
253 | fish biodiversity in an Arctic fjord", | 253 | fish biodiversity in an Arctic fjord", | ||
254 | "type": "dataset", | 254 | "type": "dataset", | ||
255 | "url": null, | 255 | "url": null, | ||
256 | "version": "1.0" | 256 | "version": "1.0" | ||
257 | } | 257 | } |