Changes
On January 22, 2021 at 8:17:20 AM UTC, Reinhard Mey:
-
Updated description of resource Functions diameter modelling in Generalised stand descriptions in Switzerland from
This R file contains the functions used to produce the generalised diameter distributions in Mey et al. 2020.
toThis R file contains the functions used to produce the generalised diameter distributions in Mey et al. 2021.
f | 1 | { | f | 1 | { |
2 | "author": "[{\"affiliation\": \"WSL\", \"affiliation_02\": \"ETH\", | 2 | "author": "[{\"affiliation\": \"WSL\", \"affiliation_02\": \"ETH\", | ||
3 | \"affiliation_03\": \"\", \"data_credit\": \"publication\", \"email\": | 3 | \"affiliation_03\": \"\", \"data_credit\": \"publication\", \"email\": | ||
4 | \"reinhard.mey@wsl.ch\", \"given_name\": \"Reinhard\", \"identifier\": | 4 | \"reinhard.mey@wsl.ch\", \"given_name\": \"Reinhard\", \"identifier\": | ||
5 | \"0000-0003-3702-0366\", \"name\": \"Mey\"}, {\"affiliation\": | 5 | \"0000-0003-3702-0366\", \"name\": \"Mey\"}, {\"affiliation\": | ||
6 | \"WSL\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | 6 | \"WSL\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | ||
7 | \"data_credit\": \"publication\", \"email\": | 7 | \"data_credit\": \"publication\", \"email\": | ||
8 | \"golo.stadelmann@wsl.ch\", \"given_name\": \"Golo\", \"identifier\": | 8 | \"golo.stadelmann@wsl.ch\", \"given_name\": \"Golo\", \"identifier\": | ||
9 | \"0000-0001-6466-0161\", \"name\": \"Stadelmann\"}, {\"affiliation\": | 9 | \"0000-0001-6466-0161\", \"name\": \"Stadelmann\"}, {\"affiliation\": | ||
10 | \"WSL\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | 10 | \"WSL\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | ||
11 | \"data_credit\": \"publication\", \"email\": | 11 | \"data_credit\": \"publication\", \"email\": | ||
12 | \"esther.thuerig@wsl.ch\", \"given_name\": \"Esther\", \"identifier\": | 12 | \"esther.thuerig@wsl.ch\", \"given_name\": \"Esther\", \"identifier\": | ||
13 | \"\", \"name\": \"Th\\u00fcrig\"}, {\"affiliation\": \"ETH\", | 13 | \"\", \"name\": \"Th\\u00fcrig\"}, {\"affiliation\": \"ETH\", | ||
14 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | 14 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | ||
15 | \"publication\", \"email\": \"harald.bugmann@env.ethz.ch\", | 15 | \"publication\", \"email\": \"harald.bugmann@env.ethz.ch\", | ||
16 | \"given_name\": \"Harald\", \"identifier\": \"0000-0003-4233-0094\", | 16 | \"given_name\": \"Harald\", \"identifier\": \"0000-0003-4233-0094\", | ||
17 | \"name\": \"Bugmann\"}, {\"affiliation\": \"WSL\", \"affiliation_02\": | 17 | \"name\": \"Bugmann\"}, {\"affiliation\": \"WSL\", \"affiliation_02\": | ||
18 | \"\", \"affiliation_03\": \"\", \"data_credit\": [\"publication\", | 18 | \"\", \"affiliation_03\": \"\", \"data_credit\": [\"publication\", | ||
19 | \"supervision\"], \"email\": \"juergen.zell@wsl.ch\", \"given_name\": | 19 | \"supervision\"], \"email\": \"juergen.zell@wsl.ch\", \"given_name\": | ||
20 | \"J\\u00fcrgen\", \"identifier\": \"0000-0002-2035-2789\", \"name\": | 20 | \"J\\u00fcrgen\", \"identifier\": \"0000-0002-2035-2789\", \"name\": | ||
21 | \"Zell\"}]", | 21 | \"Zell\"}]", | ||
22 | "author_email": null, | 22 | "author_email": null, | ||
23 | "creator_user_id": "faa8e09b-c35a-4a5d-b115-cfe531ad7cc0", | 23 | "creator_user_id": "faa8e09b-c35a-4a5d-b115-cfe531ad7cc0", | ||
24 | "date": "[{\"date\": \"2020-12-07\", \"date_type\": \"collected\", | 24 | "date": "[{\"date\": \"2020-12-07\", \"date_type\": \"collected\", | ||
25 | \"end_date\": \"\"}]", | 25 | \"end_date\": \"\"}]", | ||
26 | "doi": "10.16904/envidat.197", | 26 | "doi": "10.16904/envidat.197", | ||
27 | "funding": "[{\"grant_number\": \"project 407340_172372\", | 27 | "funding": "[{\"grant_number\": \"project 407340_172372\", | ||
28 | \"institution\": \"Swiss National Science Foundation (program NRP | 28 | \"institution\": \"Swiss National Science Foundation (program NRP | ||
29 | 73)\", \"institution_url\": | 29 | 73)\", \"institution_url\": | ||
30 | tp://www.snf.ch/en/researchinFocus/nrp/nfp-73/Pages/default.aspx\"}]", | 30 | tp://www.snf.ch/en/researchinFocus/nrp/nfp-73/Pages/default.aspx\"}]", | ||
31 | "groups": [], | 31 | "groups": [], | ||
32 | "id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | 32 | "id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | ||
33 | "isopen": false, | 33 | "isopen": false, | ||
34 | "language": "en", | 34 | "language": "en", | ||
35 | "license_id": "wsl-data", | 35 | "license_id": "wsl-data", | ||
36 | "license_title": "WSL Data Policy", | 36 | "license_title": "WSL Data Policy", | ||
37 | "license_url": | 37 | "license_url": | ||
38 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | 38 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | ||
39 | "maintainer": "{\"affiliation\": \"WSL\", \"email\": | 39 | "maintainer": "{\"affiliation\": \"WSL\", \"email\": | ||
40 | \"fabrizio.cioldi@wsl.ch\", \"given_name\": \"Fabrizio\", | 40 | \"fabrizio.cioldi@wsl.ch\", \"given_name\": \"Fabrizio\", | ||
41 | \"identifier\": \"\", \"name\": \"Cioldi\"}", | 41 | \"identifier\": \"\", \"name\": \"Cioldi\"}", | ||
42 | "maintainer_email": null, | 42 | "maintainer_email": null, | ||
43 | "metadata_created": "2020-12-07T11:40:55.735667", | 43 | "metadata_created": "2020-12-07T11:40:55.735667", | ||
n | 44 | "metadata_modified": "2021-01-22T08:16:29.198870", | n | 44 | "metadata_modified": "2021-01-22T08:17:20.911620", |
45 | "name": "generalised-stand-descriptions-within-the-swiss-nfi", | 45 | "name": "generalised-stand-descriptions-within-the-swiss-nfi", | ||
46 | "notes": "The files refer to the data and R code used in Mey et al. | 46 | "notes": "The files refer to the data and R code used in Mey et al. | ||
47 | \"From small forest samples to generalised uni- and bimodal stand | 47 | \"From small forest samples to generalised uni- and bimodal stand | ||
48 | descriptions\" (2021) _Methods in Ecology and | 48 | descriptions\" (2021) _Methods in Ecology and | ||
49 | Evolution_.\r\n\r\n__Generalised stand descriptions__ are coming from | 49 | Evolution_.\r\n\r\n__Generalised stand descriptions__ are coming from | ||
50 | the simultaneous examination of samples that are representative for a | 50 | the simultaneous examination of samples that are representative for a | ||
51 | specific target area (here, Switzerland) and link available | 51 | specific target area (here, Switzerland) and link available | ||
52 | information about forest stand attributes. They combine the modelling | 52 | information about forest stand attributes. They combine the modelling | ||
53 | of uni- or bimodal diameter distributions and species compositions, | 53 | of uni- or bimodal diameter distributions and species compositions, | ||
54 | i.e. the shares of stems of individual species. Generalised stand | 54 | i.e. the shares of stems of individual species. Generalised stand | ||
55 | descriptions may be used to interpret tree species diversity, | 55 | descriptions may be used to interpret tree species diversity, | ||
56 | regeneration and harvest potentials on a plot-level basis, and to | 56 | regeneration and harvest potentials on a plot-level basis, and to | ||
57 | initialise forest models with representative stand data.\r\n\r\nThe | 57 | initialise forest models with representative stand data.\r\n\r\nThe | ||
58 | data stored here were derived from the fourth campaigns of the Swiss | 58 | data stored here were derived from the fourth campaigns of the Swiss | ||
59 | National Forest Inventory (NFI). The raw data from the Swiss NFI can | 59 | National Forest Inventory (NFI). The raw data from the Swiss NFI can | ||
60 | be provided free of charge within the scope of a contractual agreement | 60 | be provided free of charge within the scope of a contractual agreement | ||
61 | ten-en.php).\r\n\r\n---------------------------------------\r\n\r\nThe | 61 | ten-en.php).\r\n\r\n---------------------------------------\r\n\r\nThe | ||
62 | file 'Data Figures 2 and 4' is publicly available and contains the | 62 | file 'Data Figures 2 and 4' is publicly available and contains the | ||
63 | data used to produce the Figures 2 and 4 published in the | 63 | data used to produce the Figures 2 and 4 published in the | ||
64 | paper.\r\n\r\nThe files 'Data diameter modelling' and 'Data species | 64 | paper.\r\n\r\nThe files 'Data diameter modelling' and 'Data species | ||
65 | modelling' contain all the data required to reproduce the diameter and | 65 | modelling' contain all the data required to reproduce the diameter and | ||
66 | species model building. The access to these two files is restricted as | 66 | species model building. The access to these two files is restricted as | ||
67 | they contain raw data from the fourth Swiss NFI, submitted to the | 67 | they contain raw data from the fourth Swiss NFI, submitted to the | ||
68 | Swiss law and only accessible upon contractual agreement.\r\n\r\nThe | 68 | Swiss law and only accessible upon contractual agreement.\r\n\r\nThe | ||
69 | files 'Script diameter and species modelling' and 'Functions diameter | 69 | files 'Script diameter and species modelling' and 'Functions diameter | ||
70 | modelling' are publicly available and provide the R code used to | 70 | modelling' are publicly available and provide the R code used to | ||
71 | derive the generalised stand descriptions from the Swiss NFI data.", | 71 | derive the generalised stand descriptions from the Swiss NFI data.", | ||
72 | "num_resources": 5, | 72 | "num_resources": 5, | ||
73 | "num_tags": 7, | 73 | "num_tags": 7, | ||
74 | "organization": { | 74 | "organization": { | ||
75 | "approval_status": "approved", | 75 | "approval_status": "approved", | ||
76 | "created": "2018-02-28T00:27:25.205540", | 76 | "created": "2018-02-28T00:27:25.205540", | ||
77 | "description": "We analyze recent state as well as future | 77 | "description": "We analyze recent state as well as future | ||
78 | development of forests and its services. Based on the [Swiss national | 78 | development of forests and its services. Based on the [Swiss national | ||
79 | forest inventory (NFI)](https://www.envidat.ch/organization/about/nfi | 79 | forest inventory (NFI)](https://www.envidat.ch/organization/about/nfi | ||
80 | \"NFI\") we estimate growing stock, increment, cut and mortality of | 80 | \"NFI\") we estimate growing stock, increment, cut and mortality of | ||
81 | wood as well as derived variables such as biomass, dead wood and | 81 | wood as well as derived variables such as biomass, dead wood and | ||
82 | carbon. We model scenarios of forest development under different | 82 | carbon. We model scenarios of forest development under different | ||
83 | management scenarios, climate change and disturbances. We thereby | 83 | management scenarios, climate change and disturbances. We thereby | ||
84 | focus on following research questions.\r\n\r\n * Implementing | 84 | focus on following research questions.\r\n\r\n * Implementing | ||
85 | data-based variables for forestry relevant estimates (SQL, SAS)\r\n * | 85 | data-based variables for forestry relevant estimates (SQL, SAS)\r\n * | ||
86 | Improving biometric functions to estimate growing stock, increment, | 86 | Improving biometric functions to estimate growing stock, increment, | ||
87 | cut and mortality\r\n * Development of forest scenario models\r\n * | 87 | cut and mortality\r\n * Development of forest scenario models\r\n * | ||
88 | Adaptation of empirical growth functions to climate change\r\n * | 88 | Adaptation of empirical growth functions to climate change\r\n * | ||
89 | Compiling and improving forest data for the Swiss Greenhouse Gas | 89 | Compiling and improving forest data for the Swiss Greenhouse Gas | ||
90 | Inventory and the Kyoto Tables\r\n * Elaborating scenarios of forest | 90 | Inventory and the Kyoto Tables\r\n * Elaborating scenarios of forest | ||
91 | development under climate change, forest management and | 91 | development under climate change, forest management and | ||
92 | disturbances\r\n * Evaluation of forest inventories from Cantons / | 92 | disturbances\r\n * Evaluation of forest inventories from Cantons / | ||
93 | Liechtenstein\r\n\r\n__Further information:__ | 93 | Liechtenstein\r\n\r\n__Further information:__ | ||
94 | esearch-units/forest-resources-and-management/resource-analysis.html", | 94 | esearch-units/forest-resources-and-management/resource-analysis.html", | ||
95 | "id": "2f7464c3-35b7-4076-9e19-4a5a08065e38", | 95 | "id": "2f7464c3-35b7-4076-9e19-4a5a08065e38", | ||
96 | "image_url": "2018-07-10-090907.609689LogoWSL.svg", | 96 | "image_url": "2018-07-10-090907.609689LogoWSL.svg", | ||
97 | "is_organization": true, | 97 | "is_organization": true, | ||
98 | "name": "resource-analysis", | 98 | "name": "resource-analysis", | ||
99 | "state": "active", | 99 | "state": "active", | ||
100 | "title": "Resource Analysis", | 100 | "title": "Resource Analysis", | ||
101 | "type": "organization" | 101 | "type": "organization" | ||
102 | }, | 102 | }, | ||
103 | "owner_org": "2f7464c3-35b7-4076-9e19-4a5a08065e38", | 103 | "owner_org": "2f7464c3-35b7-4076-9e19-4a5a08065e38", | ||
104 | "private": false, | 104 | "private": false, | ||
105 | "publication": "{\"publication_year\": \"2020\", \"publisher\": | 105 | "publication": "{\"publication_year\": \"2020\", \"publisher\": | ||
106 | \"EnviDat\"}", | 106 | \"EnviDat\"}", | ||
107 | "publication_state": "published", | 107 | "publication_state": "published", | ||
108 | "related_datasets": "", | 108 | "related_datasets": "", | ||
109 | "related_publications": "Mey, R., Stadelmann, G., Th\u00fcrig, E., | 109 | "related_publications": "Mey, R., Stadelmann, G., Th\u00fcrig, E., | ||
110 | Bugmann, H. & Zell, J. (2021). From small forest samples to | 110 | Bugmann, H. & Zell, J. (2021). From small forest samples to | ||
111 | generalised uni- and bimodal stand descriptions. Methods in Ecology | 111 | generalised uni- and bimodal stand descriptions. Methods in Ecology | ||
112 | and Evolution.", | 112 | and Evolution.", | ||
113 | "relationships_as_object": [], | 113 | "relationships_as_object": [], | ||
114 | "relationships_as_subject": [], | 114 | "relationships_as_subject": [], | ||
115 | "resource_type": "datapaper", | 115 | "resource_type": "datapaper", | ||
116 | "resource_type_general": "datapaper", | 116 | "resource_type_general": "datapaper", | ||
117 | "resources": [ | 117 | "resources": [ | ||
118 | { | 118 | { | ||
119 | "cache_last_updated": null, | 119 | "cache_last_updated": null, | ||
120 | "cache_url": null, | 120 | "cache_url": null, | ||
121 | "created": "2020-12-07T13:16:58.113889", | 121 | "created": "2020-12-07T13:16:58.113889", | ||
122 | "description": "This csv file contains the data required to | 122 | "description": "This csv file contains the data required to | ||
123 | reproduce Figure 2 and Figure 4.\r\n\r\n* 'stand_type' states whether | 123 | reproduce Figure 2 and Figure 4.\r\n\r\n* 'stand_type' states whether | ||
124 | a row corresponds to NFI4 average summary statistics describing a | 124 | a row corresponds to NFI4 average summary statistics describing a | ||
125 | generalised beech-dominated, spruce-dominated or an unspecified forest | 125 | generalised beech-dominated, spruce-dominated or an unspecified forest | ||
126 | stand in Switzerland in its unimodal or bimodal form (e.g. 'beech.uni' | 126 | stand in Switzerland in its unimodal or bimodal form (e.g. 'beech.uni' | ||
127 | refers to a generalised unimodal beech-dominated stand)\r\n* 'md' | 127 | refers to a generalised unimodal beech-dominated stand)\r\n* 'md' | ||
128 | refers to the mean diameter\r\n* 'dq10' refers to the 10% quantile of | 128 | refers to the mean diameter\r\n* 'dq10' refers to the 10% quantile of | ||
129 | the diameter\r\n* 'dq90' refers to the 90% quantile of the | 129 | the diameter\r\n* 'dq90' refers to the 90% quantile of the | ||
130 | diameter\r\n* 'spr' refers to the spread between minimal and maximal | 130 | diameter\r\n* 'spr' refers to the spread between minimal and maximal | ||
131 | diameter\r\n* 'nph' refers to the number of stems per hectare\r\n* | 131 | diameter\r\n* 'nph' refers to the number of stems per hectare\r\n* | ||
132 | 'o.qmd' refers to the overstorey quadratic mean diameter\r\n* | 132 | 'o.qmd' refers to the overstorey quadratic mean diameter\r\n* | ||
133 | 'rho.emp' refers to proportion parameter (rho) determined by | 133 | 'rho.emp' refers to proportion parameter (rho) determined by | ||
134 | breakpoint setting\r\n* 'ba' refers to the basal area per hectare\r\n* | 134 | breakpoint setting\r\n* 'ba' refers to the basal area per hectare\r\n* | ||
135 | 'drel' refers to the relative diameter ('drel' = (d - min(d)) / | 135 | 'drel' refers to the relative diameter ('drel' = (d - min(d)) / | ||
136 | (max(d) - min(d)))\r\n* 'temp' refers to the mean winter temperature | 136 | (max(d) - min(d)))\r\n* 'temp' refers to the mean winter temperature | ||
137 | (1988-2017, Dec-Feb)\r\n* 'dev' refers to the development stage of the | 137 | (1988-2017, Dec-Feb)\r\n* 'dev' refers to the development stage of the | ||
138 | stand (e.g. 'Young growth')\r\n* 'ftyp' refers to the potential climax | 138 | stand (e.g. 'Young growth')\r\n* 'ftyp' refers to the potential climax | ||
139 | forest type (e.g. 'Beech' refers to a beech-dominated stand)\r\n* | 139 | forest type (e.g. 'Beech' refers to a beech-dominated stand)\r\n* | ||
140 | 'str' refers to the stand structure\r\n* 'tillering' indicates whether | 140 | 'str' refers to the stand structure\r\n* 'tillering' indicates whether | ||
141 | the observed tree species on the NFI plot correspond to 'ftyp' | 141 | the observed tree species on the NFI plot correspond to 'ftyp' | ||
142 | ('TRUE') or not ('FALSE')\r\n* 'prodreg' refers to the Swiss | 142 | ('TRUE') or not ('FALSE')\r\n* 'prodreg' refers to the Swiss | ||
143 | production region (ecoregion)\r\n* 'fowner' refers to the forest | 143 | production region (ecoregion)\r\n* 'fowner' refers to the forest | ||
144 | ownership ('Public' or ' Private')", | 144 | ownership ('Public' or ' Private')", | ||
145 | "doi": "", | 145 | "doi": "", | ||
146 | "format": "CSV", | 146 | "format": "CSV", | ||
147 | "hash": "", | 147 | "hash": "", | ||
148 | "id": "2e6a5bbe-6836-47b2-86bb-be16ba2fe81e", | 148 | "id": "2e6a5bbe-6836-47b2-86bb-be16ba2fe81e", | ||
149 | "last_modified": "2020-12-07T13:16:57.974110", | 149 | "last_modified": "2020-12-07T13:16:57.974110", | ||
150 | "metadata_modified": "2020-12-08T17:43:50.108222", | 150 | "metadata_modified": "2020-12-08T17:43:50.108222", | ||
151 | "mimetype": "text/csv", | 151 | "mimetype": "text/csv", | ||
152 | "mimetype_inner": null, | 152 | "mimetype_inner": null, | ||
153 | "name": "Data Figures 2 and 4", | 153 | "name": "Data Figures 2 and 4", | ||
154 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | 154 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | ||
155 | "position": 0, | 155 | "position": 0, | ||
156 | "resource_size": "{\"size_units\": \"kb\", \"size_value\": | 156 | "resource_size": "{\"size_units\": \"kb\", \"size_value\": | ||
157 | \"\"}", | 157 | \"\"}", | ||
158 | "resource_type": null, | 158 | "resource_type": null, | ||
159 | "restricted": "{\"allowed_users\": \"\", \"level\": \"public\", | 159 | "restricted": "{\"allowed_users\": \"\", \"level\": \"public\", | ||
160 | \"shared_secret\": \"\"}", | 160 | \"shared_secret\": \"\"}", | ||
161 | "size": 744, | 161 | "size": 744, | ||
162 | "state": "active", | 162 | "state": "active", | ||
163 | "url": | 163 | "url": | ||
164 | e/2e6a5bbe-6836-47b2-86bb-be16ba2fe81e/download/data_figures_2_4.csv", | 164 | e/2e6a5bbe-6836-47b2-86bb-be16ba2fe81e/download/data_figures_2_4.csv", | ||
165 | "url_type": "upload" | 165 | "url_type": "upload" | ||
166 | }, | 166 | }, | ||
167 | { | 167 | { | ||
168 | "cache_last_updated": null, | 168 | "cache_last_updated": null, | ||
169 | "cache_url": null, | 169 | "cache_url": null, | ||
170 | "created": "2020-12-07T17:32:22.599674", | 170 | "created": "2020-12-07T17:32:22.599674", | ||
171 | "description": "This rds file contains a list of 5085 data | 171 | "description": "This rds file contains a list of 5085 data | ||
172 | frames required to reproduce the uni- and bimodal diameter model. Each | 172 | frames required to reproduce the uni- and bimodal diameter model. Each | ||
173 | data frame comprises single-tree diameters ('dbh') and assigned | 173 | data frame comprises single-tree diameters ('dbh') and assigned | ||
174 | representation factors ('repfa') at a single Swiss NFI4 plot.\r\n\r\n* | 174 | representation factors ('repfa') at a single Swiss NFI4 plot.\r\n\r\n* | ||
175 | 'dbh' refers to the diameter at breast height (130 cm)\r\n* 'repfa' | 175 | 'dbh' refers to the diameter at breast height (130 cm)\r\n* 'repfa' | ||
176 | refers to the representation factor used to scale up to one hectare", | 176 | refers to the representation factor used to scale up to one hectare", | ||
177 | "doi": "", | 177 | "doi": "", | ||
178 | "format": "rds", | 178 | "format": "rds", | ||
179 | "hash": "", | 179 | "hash": "", | ||
180 | "id": "9cadbc57-7eab-4415-bf97-229d52cd412b", | 180 | "id": "9cadbc57-7eab-4415-bf97-229d52cd412b", | ||
181 | "last_modified": "2020-12-07T17:32:22.431752", | 181 | "last_modified": "2020-12-07T17:32:22.431752", | ||
182 | "metadata_modified": "2020-12-08T17:44:08.410960", | 182 | "metadata_modified": "2020-12-08T17:44:08.410960", | ||
183 | "mimetype": null, | 183 | "mimetype": null, | ||
184 | "mimetype_inner": null, | 184 | "mimetype_inner": null, | ||
185 | "name": "Data diameter modelling", | 185 | "name": "Data diameter modelling", | ||
186 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | 186 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | ||
187 | "position": 1, | 187 | "position": 1, | ||
188 | "resource_size": "{\"size_units\": \"kb\", \"size_value\": | 188 | "resource_size": "{\"size_units\": \"kb\", \"size_value\": | ||
189 | \"\"}", | 189 | \"\"}", | ||
190 | "resource_type": null, | 190 | "resource_type": null, | ||
191 | "restricted": "{\"allowed_users\": \"\", \"level\": | 191 | "restricted": "{\"allowed_users\": \"\", \"level\": | ||
192 | \"same_organization\", \"shared_secret\": \"\"}", | 192 | \"same_organization\", \"shared_secret\": \"\"}", | ||
193 | "size": 243750, | 193 | "size": 243750, | ||
194 | "state": "active", | 194 | "state": "active", | ||
195 | "url": | 195 | "url": | ||
196 | eab-4415-bf97-229d52cd412b/download/data_nfi4_diameter_modelling.rds", | 196 | eab-4415-bf97-229d52cd412b/download/data_nfi4_diameter_modelling.rds", | ||
197 | "url_type": "upload" | 197 | "url_type": "upload" | ||
198 | }, | 198 | }, | ||
199 | { | 199 | { | ||
200 | "cache_last_updated": null, | 200 | "cache_last_updated": null, | ||
201 | "cache_url": null, | 201 | "cache_url": null, | ||
202 | "created": "2020-12-07T17:53:38.970374", | 202 | "created": "2020-12-07T17:53:38.970374", | ||
203 | "description": "This rds file contains a data frame with | 203 | "description": "This rds file contains a data frame with | ||
204 | single-tree and stand data required to reproduce the species | 204 | single-tree and stand data required to reproduce the species | ||
205 | composition model:\r\n\r\n* 'clnr' refers to the plot number\r\n* | 205 | composition model:\r\n\r\n* 'clnr' refers to the plot number\r\n* | ||
206 | 'spec' refers to the main tree species group (12 groups)\r\n* 'ba' | 206 | 'spec' refers to the main tree species group (12 groups)\r\n* 'ba' | ||
207 | refers to the basal area per hectare\r\n* 'nph' refers to the number | 207 | refers to the basal area per hectare\r\n* 'nph' refers to the number | ||
208 | of stems per hectare\r\n* 'drel' refers to the relative diameter | 208 | of stems per hectare\r\n* 'drel' refers to the relative diameter | ||
209 | ('drel' = (d - min(d)) / (max(d) - min(d)))\r\n* 'temp' refers to the | 209 | ('drel' = (d - min(d)) / (max(d) - min(d)))\r\n* 'temp' refers to the | ||
210 | mean winter temperature (1988-2017, Dec-Feb)\r\n* 'dev' refers to the | 210 | mean winter temperature (1988-2017, Dec-Feb)\r\n* 'dev' refers to the | ||
211 | development stage of the stand (e.g. 'Young growth')\r\n* 'ftyp' | 211 | development stage of the stand (e.g. 'Young growth')\r\n* 'ftyp' | ||
212 | refers to the potential climax forest type (e.g. 'Beech' refers to a | 212 | refers to the potential climax forest type (e.g. 'Beech' refers to a | ||
213 | beech-dominated stand)\r\n* 'str' refers to the stand structure\r\n* | 213 | beech-dominated stand)\r\n* 'str' refers to the stand structure\r\n* | ||
214 | 'tillering' indicates whether the observed tree species on the NFI | 214 | 'tillering' indicates whether the observed tree species on the NFI | ||
215 | plot correspond to 'ftyp' ('TRUE') or not ('FALSE')\r\n* 'prodreg' | 215 | plot correspond to 'ftyp' ('TRUE') or not ('FALSE')\r\n* 'prodreg' | ||
216 | refers to the Swiss production region (ecoregion)\r\n* 'fowner' refers | 216 | refers to the Swiss production region (ecoregion)\r\n* 'fowner' refers | ||
217 | to the forest ownership ('Public' or ' Private')", | 217 | to the forest ownership ('Public' or ' Private')", | ||
218 | "doi": "", | 218 | "doi": "", | ||
219 | "format": "rds", | 219 | "format": "rds", | ||
220 | "hash": "", | 220 | "hash": "", | ||
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224 | "mimetype": null, | 224 | "mimetype": null, | ||
225 | "mimetype_inner": null, | 225 | "mimetype_inner": null, | ||
226 | "name": "Data species modelling", | 226 | "name": "Data species modelling", | ||
227 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | 227 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | ||
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234 | "size": 450665, | 234 | "size": 450665, | ||
235 | "state": "active", | 235 | "state": "active", | ||
236 | "url": | 236 | "url": | ||
237 | 0bd2-400a-b0f7-75c7cf117269/download/data_nfi4_species_modelling.rds", | 237 | 0bd2-400a-b0f7-75c7cf117269/download/data_nfi4_species_modelling.rds", | ||
238 | "url_type": "upload" | 238 | "url_type": "upload" | ||
239 | }, | 239 | }, | ||
240 | { | 240 | { | ||
241 | "cache_last_updated": null, | 241 | "cache_last_updated": null, | ||
242 | "cache_url": null, | 242 | "cache_url": null, | ||
243 | "created": "2020-12-08T11:10:09.132839", | 243 | "created": "2020-12-08T11:10:09.132839", | ||
244 | "description": "This R script can be used to derive the uni- and | 244 | "description": "This R script can be used to derive the uni- and | ||
245 | bimodal Weibull log-likelihood regression models (in short: uni- and | 245 | bimodal Weibull log-likelihood regression models (in short: uni- and | ||
246 | bimodal model), the species composition model and the main results | 246 | bimodal model), the species composition model and the main results | ||
247 | presented in Mey et al. 2021 using data from the fourth Swiss NFI | 247 | presented in Mey et al. 2021 using data from the fourth Swiss NFI | ||
248 | ('data_NFI4_diameter_modelling.rds' and | 248 | ('data_NFI4_diameter_modelling.rds' and | ||
249 | 'data_NFI4_species_modelling.rds') and the R functions stored in | 249 | 'data_NFI4_species_modelling.rds') and the R functions stored in | ||
250 | 'functions_diameter_modelling.R'.", | 250 | 'functions_diameter_modelling.R'.", | ||
251 | "doi": "", | 251 | "doi": "", | ||
252 | "format": "R", | 252 | "format": "R", | ||
253 | "hash": "", | 253 | "hash": "", | ||
254 | "id": "0e6e2a50-fb05-4236-b53f-a5bafaf7a069", | 254 | "id": "0e6e2a50-fb05-4236-b53f-a5bafaf7a069", | ||
255 | "last_modified": "2020-12-08T11:10:08.987130", | 255 | "last_modified": "2020-12-08T11:10:08.987130", | ||
256 | "metadata_modified": "2021-01-22T08:16:29.205767", | 256 | "metadata_modified": "2021-01-22T08:16:29.205767", | ||
257 | "mimetype": null, | 257 | "mimetype": null, | ||
258 | "mimetype_inner": null, | 258 | "mimetype_inner": null, | ||
259 | "name": "Script diameter and species modelling", | 259 | "name": "Script diameter and species modelling", | ||
260 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | 260 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | ||
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263 | \"\"}", | 263 | \"\"}", | ||
264 | "resource_type": null, | 264 | "resource_type": null, | ||
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266 | \"shared_secret\": \"\"}", | 266 | \"shared_secret\": \"\"}", | ||
267 | "size": 16141, | 267 | "size": 16141, | ||
268 | "state": "active", | 268 | "state": "active", | ||
269 | "url": | 269 | "url": | ||
270 | 6-b53f-a5bafaf7a069/download/script_diameter_and_species_modelling.r", | 270 | 6-b53f-a5bafaf7a069/download/script_diameter_and_species_modelling.r", | ||
271 | "url_type": "upload" | 271 | "url_type": "upload" | ||
272 | }, | 272 | }, | ||
273 | { | 273 | { | ||
274 | "cache_last_updated": null, | 274 | "cache_last_updated": null, | ||
275 | "cache_url": null, | 275 | "cache_url": null, | ||
276 | "created": "2020-12-08T11:15:33.163691", | 276 | "created": "2020-12-08T11:15:33.163691", | ||
277 | "description": "This R file contains the functions used to | 277 | "description": "This R file contains the functions used to | ||
n | 278 | produce the generalised diameter distributions in Mey et al. 2020.", | n | 278 | produce the generalised diameter distributions in Mey et al. 2021.", |
279 | "doi": "", | 279 | "doi": "", | ||
280 | "format": "R", | 280 | "format": "R", | ||
281 | "hash": "", | 281 | "hash": "", | ||
282 | "id": "e3f02601-e820-4df9-bcc9-c21bea82dc38", | 282 | "id": "e3f02601-e820-4df9-bcc9-c21bea82dc38", | ||
283 | "last_modified": "2020-12-08T11:15:33.005272", | 283 | "last_modified": "2020-12-08T11:15:33.005272", | ||
t | 284 | "metadata_modified": "2020-12-08T13:28:50.349964", | t | 284 | "metadata_modified": "2021-01-22T08:17:20.917773", |
285 | "mimetype": null, | 285 | "mimetype": null, | ||
286 | "mimetype_inner": null, | 286 | "mimetype_inner": null, | ||
287 | "name": "Functions diameter modelling", | 287 | "name": "Functions diameter modelling", | ||
288 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | 288 | "package_id": "f8fe4971-0538-4d8e-b866-8d1cfd4b1584", | ||
289 | "position": 4, | 289 | "position": 4, | ||
290 | "resource_size": "{\"size_units\": \"kb\", \"size_value\": | 290 | "resource_size": "{\"size_units\": \"kb\", \"size_value\": | ||
291 | \"\"}", | 291 | \"\"}", | ||
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294 | \"shared_secret\": \"\"}", | 294 | \"shared_secret\": \"\"}", | ||
295 | "size": 20702, | 295 | "size": 20702, | ||
296 | "state": "active", | 296 | "state": "active", | ||
297 | "url": | 297 | "url": | ||
298 | -e820-4df9-bcc9-c21bea82dc38/download/functions_diameter_modelling.r", | 298 | -e820-4df9-bcc9-c21bea82dc38/download/functions_diameter_modelling.r", | ||
299 | "url_type": "upload" | 299 | "url_type": "upload" | ||
300 | } | 300 | } | ||
301 | ], | 301 | ], | ||
302 | "spatial": | 302 | "spatial": | ||
303 | 80838],[10.49203,47.80838],[10.49203,45.81802],[5.95587,45.81802]]]}", | 303 | 80838],[10.49203,47.80838],[10.49203,45.81802],[5.95587,45.81802]]]}", | ||
304 | "spatial_info": "Switzerland", | 304 | "spatial_info": "Switzerland", | ||
305 | "state": "active", | 305 | "state": "active", | ||
306 | "subtitle": "", | 306 | "subtitle": "", | ||
307 | "tags": [ | 307 | "tags": [ | ||
308 | { | 308 | { | ||
309 | "display_name": "FOREST MODEL INITIALISATION", | 309 | "display_name": "FOREST MODEL INITIALISATION", | ||
310 | "id": "20e33b41-8356-4ba8-bd14-851e4140cb1a", | 310 | "id": "20e33b41-8356-4ba8-bd14-851e4140cb1a", | ||
311 | "name": "FOREST MODEL INITIALISATION", | 311 | "name": "FOREST MODEL INITIALISATION", | ||
312 | "state": "active", | 312 | "state": "active", | ||
313 | "vocabulary_id": null | 313 | "vocabulary_id": null | ||
314 | }, | 314 | }, | ||
315 | { | 315 | { | ||
316 | "display_name": "FOREST STAND DESCRIPTION", | 316 | "display_name": "FOREST STAND DESCRIPTION", | ||
317 | "id": "22150e2a-f024-459e-a56c-dfad01c1ee28", | 317 | "id": "22150e2a-f024-459e-a56c-dfad01c1ee28", | ||
318 | "name": "FOREST STAND DESCRIPTION", | 318 | "name": "FOREST STAND DESCRIPTION", | ||
319 | "state": "active", | 319 | "state": "active", | ||
320 | "vocabulary_id": null | 320 | "vocabulary_id": null | ||
321 | }, | 321 | }, | ||
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324 | "id": "0aae83ac-30fa-4f6d-9a0b-e37d12e353f4", | 324 | "id": "0aae83ac-30fa-4f6d-9a0b-e37d12e353f4", | ||
325 | "name": "NATIONAL FOREST INVENTORY", | 325 | "name": "NATIONAL FOREST INVENTORY", | ||
326 | "state": "active", | 326 | "state": "active", | ||
327 | "vocabulary_id": null | 327 | "vocabulary_id": null | ||
328 | }, | 328 | }, | ||
329 | { | 329 | { | ||
330 | "display_name": "SMALL FOREST SAMPLES", | 330 | "display_name": "SMALL FOREST SAMPLES", | ||
331 | "id": "4c6936ed-9b6b-4ace-9ab0-78fd498d686e", | 331 | "id": "4c6936ed-9b6b-4ace-9ab0-78fd498d686e", | ||
332 | "name": "SMALL FOREST SAMPLES", | 332 | "name": "SMALL FOREST SAMPLES", | ||
333 | "state": "active", | 333 | "state": "active", | ||
334 | "vocabulary_id": null | 334 | "vocabulary_id": null | ||
335 | }, | 335 | }, | ||
336 | { | 336 | { | ||
337 | "display_name": "TREE SPECIES COMPOSITION", | 337 | "display_name": "TREE SPECIES COMPOSITION", | ||
338 | "id": "2325b23c-5b5e-4943-9af6-46971fdf58a7", | 338 | "id": "2325b23c-5b5e-4943-9af6-46971fdf58a7", | ||
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340 | "state": "active", | 340 | "state": "active", | ||
341 | "vocabulary_id": null | 341 | "vocabulary_id": null | ||
342 | }, | 342 | }, | ||
343 | { | 343 | { | ||
344 | "display_name": "TRUNCATED AND MIXED DIAMETER DISTRIBUTIONS", | 344 | "display_name": "TRUNCATED AND MIXED DIAMETER DISTRIBUTIONS", | ||
345 | "id": "2ff995ec-d72a-4684-a8e8-a1a35cef973c", | 345 | "id": "2ff995ec-d72a-4684-a8e8-a1a35cef973c", | ||
346 | "name": "TRUNCATED AND MIXED DIAMETER DISTRIBUTIONS", | 346 | "name": "TRUNCATED AND MIXED DIAMETER DISTRIBUTIONS", | ||
347 | "state": "active", | 347 | "state": "active", | ||
348 | "vocabulary_id": null | 348 | "vocabulary_id": null | ||
349 | }, | 349 | }, | ||
350 | { | 350 | { | ||
351 | "display_name": "WEIBULL FUNCTION", | 351 | "display_name": "WEIBULL FUNCTION", | ||
352 | "id": "ff22aed7-5715-4575-9ec2-dc1274f587a0", | 352 | "id": "ff22aed7-5715-4575-9ec2-dc1274f587a0", | ||
353 | "name": "WEIBULL FUNCTION", | 353 | "name": "WEIBULL FUNCTION", | ||
354 | "state": "active", | 354 | "state": "active", | ||
355 | "vocabulary_id": null | 355 | "vocabulary_id": null | ||
356 | } | 356 | } | ||
357 | ], | 357 | ], | ||
358 | "title": "Generalised stand descriptions in Switzerland", | 358 | "title": "Generalised stand descriptions in Switzerland", | ||
359 | "type": "dataset", | 359 | "type": "dataset", | ||
360 | "url": null, | 360 | "url": null, | ||
361 | "version": "1.0" | 361 | "version": "1.0" | ||
362 | } | 362 | } |