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On February 20, 2025 at 9:17:52 AM UTC,
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Updated description of Case study applications demonstrating the use and potential of the TreeMig framework v1 from
The [TreeMig framework](https://treemig.wsl.ch/en/) allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions. Here, case study examples in Switzerland are given that simulate the dynamics and spatial spread of competing tree species in a region in Switzerland, the invasion of a hypothetical invasive tree species, and the control of this species via a management model coupled to TreeMig. The datasets consist of the installation- and GUI starting-script, example environmental input data for Switzerland, the simulation environment, and further R-scripts for running the simulations and plotting the simulation results directly from R and for coupling TreeMig to the forest management model.
toThe TreeMig framework allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions. Here, case study examples in Switzerland are given that simulate the dynamics and spatial spread of competing tree species in a region in Switzerland, the invasion of a hypothetical invasive tree species, and the control of this species via a management model coupled to TreeMig. The datasets consist of the installation- and GUI starting-script, example environmental input data for Switzerland, the simulation environment, and further R-scripts for running the simulations and plotting the simulation results directly from R and for coupling TreeMig to the forest management model.
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2 | "author": "[{\"given_name\": \"Heike\", \"name\": \"Lischke\", | 2 | "author": "[{\"given_name\": \"Heike\", \"name\": \"Lischke\", | ||
3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | 3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | ||
4 | \"supervision\", \"validation\", \"publication\"], \"identifier\": \" | 4 | \"supervision\", \"validation\", \"publication\"], \"identifier\": \" | ||
5 | 0000-0003-4284-5194\", \"affiliation\": \"WSL\"}, {\"given_name\": | 5 | 0000-0003-4284-5194\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
6 | \"Dirk\", \"name\": \"Schmatz\", \"email\": \"dirk.schmatz@wsl.ch\", | 6 | \"Dirk\", \"name\": \"Schmatz\", \"email\": \"dirk.schmatz@wsl.ch\", | ||
7 | \"data_credit\": [\"collection\", \"supervision\", \"validation\", | 7 | \"data_credit\": [\"collection\", \"supervision\", \"validation\", | ||
8 | \"publication\"], \"identifier\": \"0000-0002-8198-6136\", | 8 | \"publication\"], \"identifier\": \"0000-0002-8198-6136\", | ||
9 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Achilleas\", \"name\": | 9 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Achilleas\", \"name\": | ||
10 | \"Psomas\", \"email\": \"achilleas.psomas@wsl.ch\", \"data_credit\": | 10 | \"Psomas\", \"email\": \"achilleas.psomas@wsl.ch\", \"data_credit\": | ||
11 | [\"collection\", \"validation\"], \"identifier\": \"\", | 11 | [\"collection\", \"validation\"], \"identifier\": \"\", | ||
12 | \"affiliation\": \"WSL\"}, {\"given_name\": \"David\", \"name\": | 12 | \"affiliation\": \"WSL\"}, {\"given_name\": \"David\", \"name\": | ||
13 | \"B\\u00f6hm\", \"email\": \"David.Boehm@wsl.ch\", \"data_credit\": | 13 | \"B\\u00f6hm\", \"email\": \"David.Boehm@wsl.ch\", \"data_credit\": | ||
14 | [], \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | 14 | [], \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
15 | \"Daniel\", \"name\": \"Scherrer\", \"email\": | 15 | \"Daniel\", \"name\": \"Scherrer\", \"email\": | ||
16 | \"daniel.scherrer@wsl.ch\", \"data_credit\": [\"validation\", | 16 | \"daniel.scherrer@wsl.ch\", \"data_credit\": [\"validation\", | ||
17 | \"supervision\", \"collection\", \"publication\"], \"identifier\": | 17 | \"supervision\", \"collection\", \"publication\"], \"identifier\": | ||
18 | \"0000-0001-9983-7510\", \"affiliation\": \"WSL\"}]", | 18 | \"0000-0001-9983-7510\", \"affiliation\": \"WSL\"}]", | ||
19 | "author_email": null, | 19 | "author_email": null, | ||
20 | "creator_user_id": "ad8596ef-30f6-48c0-8ef8-3644aaa65a32", | 20 | "creator_user_id": "ad8596ef-30f6-48c0-8ef8-3644aaa65a32", | ||
21 | "date": | 21 | "date": | ||
22 | \":\"created\",\"date\":\"2023-06-01\",\"end_date\":\"2024-08-01\"}]", | 22 | \":\"created\",\"date\":\"2023-06-01\",\"end_date\":\"2024-08-01\"}]", | ||
23 | "doi": "10.16904/envidat.531", | 23 | "doi": "10.16904/envidat.531", | ||
24 | "funding": "[{\"institution\":\"WSL internal | 24 | "funding": "[{\"institution\":\"WSL internal | ||
25 | project\",\"grant_number\":\"\u201cTreeMig R package and | 25 | project\",\"grant_number\":\"\u201cTreeMig R package and | ||
26 | GUI\u201d\",\"institution_url\":\"\"}]", | 26 | GUI\u201d\",\"institution_url\":\"\"}]", | ||
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31 | "license_title": "Creative Commons Attribution", | 31 | "license_title": "Creative Commons Attribution", | ||
32 | "license_url": "https://creativecommons.org/licenses/by/4.0/", | 32 | "license_url": "https://creativecommons.org/licenses/by/4.0/", | ||
33 | "maintainer": | 33 | "maintainer": | ||
34 | l.scherrer@wsl.ch\",\"given_name\":\"Daniel\",\"name\":\"Scherrer\"}", | 34 | l.scherrer@wsl.ch\",\"given_name\":\"Daniel\",\"name\":\"Scherrer\"}", | ||
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36 | "metadata_created": "2024-08-08T14:09:42.153944", | 36 | "metadata_created": "2024-08-08T14:09:42.153944", | ||
n | 37 | "metadata_modified": "2024-12-04T12:29:56.452587", | n | 37 | "metadata_modified": "2025-02-20T09:17:52.682448", |
38 | "name": | 38 | "name": | ||
39 | pplications-demonstrating-the-use-and-potential-of-the-treemig-frame", | 39 | pplications-demonstrating-the-use-and-potential-of-the-treemig-frame", | ||
t | 40 | "notes": "The [TreeMig framework](https://treemig.wsl.ch/en/) allows | t | 40 | "notes": "The TreeMig framework allows for an easy application of |
41 | for an easy application of the forest landscape model TreeMig for | 41 | the forest landscape model TreeMig for simulating forest dynamics in | ||
42 | simulating forest dynamics in space under changing environmental and | 42 | space under changing environmental and land use conditions.\n\nHere, | ||
43 | land use conditions.\n\nHere, case study examples in Switzerland are | 43 | case study examples in Switzerland are given that simulate the | ||
44 | given that simulate the dynamics and spatial spread of competing tree | 44 | dynamics and spatial spread of competing tree species in a region in | ||
45 | species in a region in Switzerland, the invasion of a hypothetical | 45 | Switzerland, the invasion of a hypothetical invasive tree species, and | ||
46 | invasive tree species, and the control of this species via a | 46 | the control of this species via a management model coupled to TreeMig. | ||
47 | management model coupled to TreeMig. The datasets consist of the | 47 | The datasets consist of the installation- and GUI starting-script, | ||
48 | installation- and GUI starting-script, example environmental input | 48 | example environmental input data for Switzerland, the simulation | ||
49 | data for Switzerland, the simulation environment, and further | 49 | environment, and further R-scripts for running the simulations and | ||
50 | R-scripts for running the simulations and plotting the simulation | 50 | plotting the simulation results directly from R and for coupling | ||
51 | results directly from R and for coupling TreeMig to the forest | 51 | TreeMig to the forest management model.", | ||
52 | management model.", | ||||
53 | "num_resources": 4, | 52 | "num_resources": 4, | ||
54 | "num_tags": 11, | 53 | "num_tags": 11, | ||
55 | "organization": { | 54 | "organization": { | ||
56 | "approval_status": "approved", | 55 | "approval_status": "approved", | ||
57 | "created": "2018-05-31T14:24:18.890912", | 56 | "created": "2018-05-31T14:24:18.890912", | ||
58 | "description": "The dynamic macroecology group studies different | 57 | "description": "The dynamic macroecology group studies different | ||
59 | aspects of ecology on large spatial and temporal scales, from the | 58 | aspects of ecology on large spatial and temporal scales, from the | ||
60 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | 59 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | ||
61 | species and their traits change in space and time, particularly with | 60 | species and their traits change in space and time, particularly with | ||
62 | global change?\u201d", | 61 | global change?\u201d", | ||
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64 | "image_url": "", | 63 | "image_url": "", | ||
65 | "is_organization": true, | 64 | "is_organization": true, | ||
66 | "name": "dynamic-macroecology", | 65 | "name": "dynamic-macroecology", | ||
67 | "state": "active", | 66 | "state": "active", | ||
68 | "title": "Dynamic Macroecology", | 67 | "title": "Dynamic Macroecology", | ||
69 | "type": "organization" | 68 | "type": "organization" | ||
70 | }, | 69 | }, | ||
71 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | 70 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | ||
72 | "private": false, | 71 | "private": false, | ||
73 | "publication": | 72 | "publication": | ||
74 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | 73 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | ||
75 | "publication_state": "published", | 74 | "publication_state": "published", | ||
76 | "related_datasets": | 75 | "related_datasets": | ||
77 | r-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-\n", | 76 | r-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-\n", | ||
78 | "related_publications": | 77 | "related_publications": | ||
79 | A23775\n\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | 78 | A23775\n\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | ||
80 | "relationships_as_object": [], | 79 | "relationships_as_object": [], | ||
81 | "relationships_as_subject": [], | 80 | "relationships_as_subject": [], | ||
82 | "resource_type": "dataset", | 81 | "resource_type": "dataset", | ||
83 | "resource_type_general": "dataset", | 82 | "resource_type_general": "dataset", | ||
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88 | "created": "2024-08-08T14:12:56.721099", | 87 | "created": "2024-08-08T14:12:56.721099", | ||
89 | "description": "R-script to install the TreeMig framework and | 88 | "description": "R-script to install the TreeMig framework and | ||
90 | start the graphical user interface", | 89 | start the graphical user interface", | ||
91 | "doi": "", | 90 | "doi": "", | ||
92 | "format": "R", | 91 | "format": "R", | ||
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118 | "description": "Where the environmental and land use input data | 117 | "description": "Where the environmental and land use input data | ||
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145 | "created": "2024-10-16T10:35:37.634128", | 144 | "created": "2024-10-16T10:35:37.634128", | ||
146 | "description": "1) Simulation environment | 145 | "description": "1) Simulation environment | ||
147 | TMEnvironmentExampleApplications for the simulation of the case study | 146 | TMEnvironmentExampleApplications for the simulation of the case study | ||
148 | applications. It contains a) simulation settings (folder C), b) | 147 | applications. It contains a) simulation settings (folder C), b) | ||
149 | species parameters (folder P), c) folders S, R and P for the state | 148 | species parameters (folder P), c) folders S, R and P for the state | ||
150 | files and results and plots to be produced, and the binaries of the | 149 | files and results and plots to be produced, and the binaries of the | ||
151 | TreeMig model.\n2) Input data for Switzerland in TMInputData (Climate, | 150 | TreeMig model.\n2) Input data for Switzerland in TMInputData (Climate, | ||
152 | soil, land cover, DEM)\n3) Several R scripts (folder Scripts) to run | 151 | soil, land cover, DEM)\n3) Several R scripts (folder Scripts) to run | ||
153 | and plot the simulations directly from R without having to use the | 152 | and plot the simulations directly from R without having to use the | ||
154 | graphical user interface.\nFor learning how to use TreeMig we | 153 | graphical user interface.\nFor learning how to use TreeMig we | ||
155 | recommend the starter kit | 154 | recommend the starter kit | ||
156 | https://www.doi.org/10.16904/envidat.533.\n", | 155 | https://www.doi.org/10.16904/envidat.533.\n", | ||
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203 | "url_type": "upload" | 202 | "url_type": "upload" | ||
204 | } | 203 | } | ||
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206 | "spatial": | 205 | "spatial": | ||
207 | cations-demonstrating-the-use-and-potential-of-the-treemig-frame\"}}", | 206 | cations-demonstrating-the-use-and-potential-of-the-treemig-frame\"}}", | ||
208 | "state": "active", | 207 | "state": "active", | ||
209 | "subtitle": "", | 208 | "subtitle": "", | ||
210 | "tags": [ | 209 | "tags": [ | ||
211 | { | 210 | { | ||
212 | "display_name": "BIOCLIMATIC VARIABLES", | 211 | "display_name": "BIOCLIMATIC VARIABLES", | ||
213 | "id": "bd4ddaeb-49e0-4172-8432-025adeb042ec", | 212 | "id": "bd4ddaeb-49e0-4172-8432-025adeb042ec", | ||
214 | "name": "BIOCLIMATIC VARIABLES", | 213 | "name": "BIOCLIMATIC VARIABLES", | ||
215 | "state": "active", | 214 | "state": "active", | ||
216 | "vocabulary_id": null | 215 | "vocabulary_id": null | ||
217 | }, | 216 | }, | ||
218 | { | 217 | { | ||
219 | "display_name": "CLIMATE CHANGE", | 218 | "display_name": "CLIMATE CHANGE", | ||
220 | "id": "7586fd99-56bd-4c44-ace2-14d87ec1dd9b", | 219 | "id": "7586fd99-56bd-4c44-ace2-14d87ec1dd9b", | ||
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222 | "state": "active", | 221 | "state": "active", | ||
223 | "vocabulary_id": null | 222 | "vocabulary_id": null | ||
224 | }, | 223 | }, | ||
225 | { | 224 | { | ||
226 | "display_name": "EXAMPLE APPLICATIONS", | 225 | "display_name": "EXAMPLE APPLICATIONS", | ||
227 | "id": "f0114141-8f20-474f-84fa-7fe9e48aeda3", | 226 | "id": "f0114141-8f20-474f-84fa-7fe9e48aeda3", | ||
228 | "name": "EXAMPLE APPLICATIONS", | 227 | "name": "EXAMPLE APPLICATIONS", | ||
229 | "state": "active", | 228 | "state": "active", | ||
230 | "vocabulary_id": null | 229 | "vocabulary_id": null | ||
231 | }, | 230 | }, | ||
232 | { | 231 | { | ||
233 | "display_name": "FOREST", | 232 | "display_name": "FOREST", | ||
234 | "id": "90cd0d8f-8df0-4b78-ac11-6e38c2a22106", | 233 | "id": "90cd0d8f-8df0-4b78-ac11-6e38c2a22106", | ||
235 | "name": "FOREST", | 234 | "name": "FOREST", | ||
236 | "state": "active", | 235 | "state": "active", | ||
237 | "vocabulary_id": null | 236 | "vocabulary_id": null | ||
238 | }, | 237 | }, | ||
239 | { | 238 | { | ||
240 | "display_name": "FOREST DYNAMICS", | 239 | "display_name": "FOREST DYNAMICS", | ||
241 | "id": "84957a0d-7cb0-4e32-8633-f8c2e9b2a10f", | 240 | "id": "84957a0d-7cb0-4e32-8633-f8c2e9b2a10f", | ||
242 | "name": "FOREST DYNAMICS", | 241 | "name": "FOREST DYNAMICS", | ||
243 | "state": "active", | 242 | "state": "active", | ||
244 | "vocabulary_id": null | 243 | "vocabulary_id": null | ||
245 | }, | 244 | }, | ||
246 | { | 245 | { | ||
247 | "display_name": "FOREST MANAGEMENT", | 246 | "display_name": "FOREST MANAGEMENT", | ||
248 | "id": "d4404f05-ef28-4de6-b269-17713089be84", | 247 | "id": "d4404f05-ef28-4de6-b269-17713089be84", | ||
249 | "name": "FOREST MANAGEMENT", | 248 | "name": "FOREST MANAGEMENT", | ||
250 | "state": "active", | 249 | "state": "active", | ||
251 | "vocabulary_id": null | 250 | "vocabulary_id": null | ||
252 | }, | 251 | }, | ||
253 | { | 252 | { | ||
254 | "display_name": "LAND USE", | 253 | "display_name": "LAND USE", | ||
255 | "id": "4fce8a86-0614-4758-863c-9abc3b68b715", | 254 | "id": "4fce8a86-0614-4758-863c-9abc3b68b715", | ||
256 | "name": "LAND USE", | 255 | "name": "LAND USE", | ||
257 | "state": "active", | 256 | "state": "active", | ||
258 | "vocabulary_id": null | 257 | "vocabulary_id": null | ||
259 | }, | 258 | }, | ||
260 | { | 259 | { | ||
261 | "display_name": "R PACKAGE", | 260 | "display_name": "R PACKAGE", | ||
262 | "id": "3ba3a618-38b0-4788-b795-9836b692b3b3", | 261 | "id": "3ba3a618-38b0-4788-b795-9836b692b3b3", | ||
263 | "name": "R PACKAGE", | 262 | "name": "R PACKAGE", | ||
264 | "state": "active", | 263 | "state": "active", | ||
265 | "vocabulary_id": null | 264 | "vocabulary_id": null | ||
266 | }, | 265 | }, | ||
267 | { | 266 | { | ||
268 | "display_name": "SPATIAL MODELLING", | 267 | "display_name": "SPATIAL MODELLING", | ||
269 | "id": "feb98f97-0e99-4f06-85b0-fe8e5b1c9b9b", | 268 | "id": "feb98f97-0e99-4f06-85b0-fe8e5b1c9b9b", | ||
270 | "name": "SPATIAL MODELLING", | 269 | "name": "SPATIAL MODELLING", | ||
271 | "state": "active", | 270 | "state": "active", | ||
272 | "vocabulary_id": null | 271 | "vocabulary_id": null | ||
273 | }, | 272 | }, | ||
274 | { | 273 | { | ||
275 | "display_name": "SPECIES MIGRATION", | 274 | "display_name": "SPECIES MIGRATION", | ||
276 | "id": "eb823eb5-8de6-435e-8531-a7a27c505418", | 275 | "id": "eb823eb5-8de6-435e-8531-a7a27c505418", | ||
277 | "name": "SPECIES MIGRATION", | 276 | "name": "SPECIES MIGRATION", | ||
278 | "state": "active", | 277 | "state": "active", | ||
279 | "vocabulary_id": null | 278 | "vocabulary_id": null | ||
280 | }, | 279 | }, | ||
281 | { | 280 | { | ||
282 | "display_name": "TREEMIG", | 281 | "display_name": "TREEMIG", | ||
283 | "id": "bd8ace98-a206-4aea-9e29-c75b349287c1", | 282 | "id": "bd8ace98-a206-4aea-9e29-c75b349287c1", | ||
284 | "name": "TREEMIG", | 283 | "name": "TREEMIG", | ||
285 | "state": "active", | 284 | "state": "active", | ||
286 | "vocabulary_id": null | 285 | "vocabulary_id": null | ||
287 | } | 286 | } | ||
288 | ], | 287 | ], | ||
289 | "title": "Case study applications demonstrating the use and | 288 | "title": "Case study applications demonstrating the use and | ||
290 | potential of the TreeMig framework v1", | 289 | potential of the TreeMig framework v1", | ||
291 | "type": "dataset", | 290 | "type": "dataset", | ||
292 | "url": null | 291 | "url": null | ||
293 | } | 292 | } |