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On February 20, 2025 at 9:22:53 AM UTC,
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Updated description of Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics from
Starter kit for the [TreeMig framework](treemig.wsl.ch) that allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions. The starter kit consists of a set of climate, land-use, topography and soil property input data for Switzerland, a script for installing the framework and running the GUI of the framework with the link to the input data, a tutorial covering a range of simulation examples for Switzerland and a transect through Europe, and an associated example simulation environment containing the model executables and other model inputs.
toStarter kit for the TreeMig framework that allows for an easy application of the forest landscape model TreeMig for simulating forest dynamics in space under changing environmental and land use conditions. The starter kit consists of a set of climate, land-use, topography and soil property input data for Switzerland, a script for installing the framework and running the GUI of the framework with the link to the input data, a tutorial covering a range of simulation examples for Switzerland and a transect through Europe, and an associated example simulation environment containing the model executables and other model inputs.
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2 | "author": "[{\"given_name\": \"Heike\", \"name\": \"Lischke\", | 2 | "author": "[{\"given_name\": \"Heike\", \"name\": \"Lischke\", | ||
3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | 3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | ||
4 | \"supervision\", \"validation\", \"publication\"], \"identifier\": | 4 | \"supervision\", \"validation\", \"publication\"], \"identifier\": | ||
5 | \"0000-0003-4284-5194\", \"affiliation\": \"WSL\"}, {\"given_name\": | 5 | \"0000-0003-4284-5194\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
6 | \"Dirk\", \"name\": \"Schmatz\", \"email\": \"dirk.schmatz@wsl.ch\", | 6 | \"Dirk\", \"name\": \"Schmatz\", \"email\": \"dirk.schmatz@wsl.ch\", | ||
7 | \"data_credit\": [], \"identifier\": \"0000-0002-8198-6136\", | 7 | \"data_credit\": [], \"identifier\": \"0000-0002-8198-6136\", | ||
8 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Achilleas\", \"name\": | 8 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Achilleas\", \"name\": | ||
9 | \"Psomas\", \"email\": \"achilleas.psomas@wsl.ch\", \"data_credit\": | 9 | \"Psomas\", \"email\": \"achilleas.psomas@wsl.ch\", \"data_credit\": | ||
10 | [\"collection\", \"validation\"], \"identifier\": \"\", | 10 | [\"collection\", \"validation\"], \"identifier\": \"\", | ||
11 | \"affiliation\": \"WSL\"}, {\"given_name\": \"David\", \"name\": | 11 | \"affiliation\": \"WSL\"}, {\"given_name\": \"David\", \"name\": | ||
12 | \"B\\u00f6hm\", \"email\": \"boehm@wsl.ch\", \"data_credit\": | 12 | \"B\\u00f6hm\", \"email\": \"boehm@wsl.ch\", \"data_credit\": | ||
13 | [\"validation\", \"publication\"], \"identifier\": \"\", | 13 | [\"validation\", \"publication\"], \"identifier\": \"\", | ||
14 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Daniel\", \"name\": | 14 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Daniel\", \"name\": | ||
15 | \"Scherrer\", \"email\": \"daniel.scherrer@wsl.ch\", \"data_credit\": | 15 | \"Scherrer\", \"email\": \"daniel.scherrer@wsl.ch\", \"data_credit\": | ||
16 | [\"software\", \"supervision\", \"validation\", \"publication\"], | 16 | [\"software\", \"supervision\", \"validation\", \"publication\"], | ||
17 | \"identifier\": \"0000-0001-9983-7510\", \"affiliation\": \"WSL\"}]", | 17 | \"identifier\": \"0000-0001-9983-7510\", \"affiliation\": \"WSL\"}]", | ||
18 | "author_email": null, | 18 | "author_email": null, | ||
19 | "creator_user_id": "ad8596ef-30f6-48c0-8ef8-3644aaa65a32", | 19 | "creator_user_id": "ad8596ef-30f6-48c0-8ef8-3644aaa65a32", | ||
20 | "date": | 20 | "date": | ||
21 | \":\"created\",\"date\":\"2023-06-01\",\"end_date\":\"2024-06-01\"}]", | 21 | \":\"created\",\"date\":\"2023-06-01\",\"end_date\":\"2024-06-01\"}]", | ||
22 | "doi": "10.16904/envidat.533", | 22 | "doi": "10.16904/envidat.533", | ||
23 | "extras": [ | 23 | "extras": [ | ||
24 | { | 24 | { | ||
25 | "key": "deprecatedResources", | 25 | "key": "deprecatedResources", | ||
26 | "value": | 26 | "value": | ||
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28 | } | 28 | } | ||
29 | ], | 29 | ], | ||
30 | "funding": "[{\"institution\":\"WSL internal | 30 | "funding": "[{\"institution\":\"WSL internal | ||
31 | project\",\"grant_number\":\"TreeMig R package and | 31 | project\",\"grant_number\":\"TreeMig R package and | ||
32 | GUI\",\"institution_url\":\"\"},{\"institution\":\"WSL internal | 32 | GUI\",\"institution_url\":\"\"},{\"institution\":\"WSL internal | ||
33 | project\",\"grant_number\":\"WSL Data conversion tool and and | 33 | project\",\"grant_number\":\"WSL Data conversion tool and and | ||
34 | benchmarking data set for spatial forest | 34 | benchmarking data set for spatial forest | ||
35 | models\",\"institution_url\":\"\"}]", | 35 | models\",\"institution_url\":\"\"}]", | ||
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39 | "license_id": "cc-by-sa", | 39 | "license_id": "cc-by-sa", | ||
40 | "license_title": "Creative Commons Attribution Share-Alike | 40 | "license_title": "Creative Commons Attribution Share-Alike | ||
41 | (CC-BY-SA)", | 41 | (CC-BY-SA)", | ||
42 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 42 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
43 | "maintainer": | 43 | "maintainer": | ||
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45 | "maintainer_email": null, | 45 | "maintainer_email": null, | ||
46 | "metadata_created": "2024-08-09T09:33:38.125081", | 46 | "metadata_created": "2024-08-09T09:33:38.125081", | ||
n | 47 | "metadata_modified": "2024-12-04T13:34:21.465141", | n | 47 | "metadata_modified": "2025-02-20T09:22:53.787571", |
48 | "name": | 48 | "name": | ||
49 | for-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-", | 49 | for-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-", | ||
t | 50 | "notes": "Starter kit for the [TreeMig framework](treemig.wsl.ch) | t | 50 | "notes": "Starter kit for the TreeMig framework that allows for an |
51 | that allows for an easy application of the forest landscape model | 51 | easy application of the forest landscape model TreeMig for simulating | ||
52 | TreeMig for simulating forest dynamics in space under changing | 52 | forest dynamics in space under changing environmental and land use | ||
53 | environmental and land use conditions. \n\nThe starter kit consists of | 53 | conditions. \n\nThe starter kit consists of a set of climate, | ||
54 | a set of climate, land-use, topography and soil property input data | 54 | land-use, topography and soil property input data for Switzerland, a | ||
55 | for Switzerland, a script for installing the framework and running the | 55 | script for installing the framework and running the GUI of the | ||
56 | GUI of the framework with the link to the input data, a tutorial | 56 | framework with the link to the input data, a tutorial covering a range | ||
57 | covering a range of simulation examples for Switzerland and a transect | 57 | of simulation examples for Switzerland and a transect through Europe, | ||
58 | through Europe, and an associated example simulation environment | 58 | and an associated example simulation environment containing the model | ||
59 | containing the model executables and other model inputs. ", | 59 | executables and other model inputs. ", | ||
60 | "num_resources": 5, | 60 | "num_resources": 5, | ||
61 | "num_tags": 11, | 61 | "num_tags": 11, | ||
62 | "organization": { | 62 | "organization": { | ||
63 | "approval_status": "approved", | 63 | "approval_status": "approved", | ||
64 | "created": "2018-05-31T14:24:18.890912", | 64 | "created": "2018-05-31T14:24:18.890912", | ||
65 | "description": "The dynamic macroecology group studies different | 65 | "description": "The dynamic macroecology group studies different | ||
66 | aspects of ecology on large spatial and temporal scales, from the | 66 | aspects of ecology on large spatial and temporal scales, from the | ||
67 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | 67 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | ||
68 | species and their traits change in space and time, particularly with | 68 | species and their traits change in space and time, particularly with | ||
69 | global change?\u201d", | 69 | global change?\u201d", | ||
70 | "id": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | 70 | "id": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | ||
71 | "image_url": "", | 71 | "image_url": "", | ||
72 | "is_organization": true, | 72 | "is_organization": true, | ||
73 | "name": "dynamic-macroecology", | 73 | "name": "dynamic-macroecology", | ||
74 | "state": "active", | 74 | "state": "active", | ||
75 | "title": "Dynamic Macroecology", | 75 | "title": "Dynamic Macroecology", | ||
76 | "type": "organization" | 76 | "type": "organization" | ||
77 | }, | 77 | }, | ||
78 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | 78 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | ||
79 | "private": false, | 79 | "private": false, | ||
80 | "publication": | 80 | "publication": | ||
81 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | 81 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | ||
82 | "publication_state": "published", | 82 | "publication_state": "published", | ||
83 | "related_datasets": | 83 | "related_datasets": | ||
84 | factors-slowing-down-upward-shifts-of-trees-upper-elevation-limits\n", | 84 | factors-slowing-down-upward-shifts-of-trees-upper-elevation-limits\n", | ||
85 | "related_publications": | 85 | "related_publications": | ||
86 | %3A23775\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | 86 | %3A23775\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | ||
87 | "relationships_as_object": [], | 87 | "relationships_as_object": [], | ||
88 | "relationships_as_subject": [], | 88 | "relationships_as_subject": [], | ||
89 | "resource_type": "dataset", | 89 | "resource_type": "dataset", | ||
90 | "resource_type_general": "dataset", | 90 | "resource_type_general": "dataset", | ||
91 | "resources": [ | 91 | "resources": [ | ||
92 | { | 92 | { | ||
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96 | "description": "Tutorial for using the TreeMig framework ", | 96 | "description": "Tutorial for using the TreeMig framework ", | ||
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148 | "created": "2024-10-16T08:49:36.787649", | 148 | "created": "2024-10-16T08:49:36.787649", | ||
149 | "description": "The zip file consists of a R-script to provide | 149 | "description": "The zip file consists of a R-script to provide | ||
150 | the framework, an example simulation environment and a set of input | 150 | the framework, an example simulation environment and a set of input | ||
151 | data. \n- The R-script installAndRunTreeMigWrapperAndGUI.R installs | 151 | data. \n- The R-script installAndRunTreeMigWrapperAndGUI.R installs | ||
152 | the R-package, links to the input data and starts the graphical user | 152 | the R-package, links to the input data and starts the graphical user | ||
153 | interface. \n- The gridded input datasets in TMInputData are | 153 | interface. \n- The gridded input datasets in TMInputData are | ||
154 | specifically tailored to Switzerland and have the same coordinate | 154 | specifically tailored to Switzerland and have the same coordinate | ||
155 | reference system and a congruent 200m spatial resolution. They consist | 155 | reference system and a congruent 200m spatial resolution. They consist | ||
156 | of climate, topographic, land use and soil data. For details see | 156 | of climate, topographic, land use and soil data. For details see | ||
157 | TMInputDataDetails.pdf. \n- TMEnvironment is an example simulation | 157 | TMInputDataDetails.pdf. \n- TMEnvironment is an example simulation | ||
158 | environment, i.e. a set of hierarchically structured folders. For the | 158 | environment, i.e. a set of hierarchically structured folders. For the | ||
159 | first example simulation of the tutorial it contains the\n - the | 159 | first example simulation of the tutorial it contains the\n - the | ||
160 | TreeMig executables for MacOS, Linux and Windows\n - simulation | 160 | TreeMig executables for MacOS, Linux and Windows\n - simulation | ||
161 | control files that define the setup and input files of the simulation | 161 | control files that define the setup and input files of the simulation | ||
162 | (in folder C)\n - species parameters (in folder P)\n - bioclimatic | 162 | (in folder C)\n - species parameters (in folder P)\n - bioclimatic | ||
163 | data (in folder E)\n - folder R for results\n - folder Plots for | 163 | data (in folder E)\n - folder R for results\n - folder Plots for | ||
164 | plots of the simulation results.\n - This environment can be also | 164 | plots of the simulation results.\n - This environment can be also | ||
165 | used for the subsequent simulations of the tutorial.\n- Some | 165 | used for the subsequent simulations of the tutorial.\n- Some | ||
166 | additional R-scripts demonstrate more complex applications described | 166 | additional R-scripts demonstrate more complex applications described | ||
167 | in the tutorial, e.g. coupling to another model.\n", | 167 | in the tutorial, e.g. coupling to another model.\n", | ||
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