Changes
On December 12, 2024 at 1:52:30 PM UTC,
-
Changed value of field
funding
to[{"institution":"Internal Funding ELE group (ETHZ/WSL)","grant_number":"","institution_url":""},{"institution":" Andromede Oceanologie","grant_number":"GOMBESSA 5","institution_url":""},{"institution":"ANR labcom 2","grant_number":"InToSea (Innovative Tools under the Sea) joint laboratory","institution_url":""},{"institution":"Manufacture de Haute Horlogerie Suisse Blancpain and Blancpain Ocean Commitment","grant_number":"","institution_url":""},{"institution":"Prince Albert II de Monaco Foundation","grant_number":"","institution_url":""},{"institution":"Société des explorations de Monaco","grant_number":"","institution_url":""},{"institution":"French Water Agency","grant_number":"","institution_url":""},{"institution":"Galaxea","grant_number":"","institution_url":""},{"institution":"Ministry of Overseas France","grant_number":"Convergence and Transformation Contract 2019-2022, measure 3.5.1.1 of the “Resilient Territories” section","institution_url":""},{"institution":"Vie Océane, Aquarium de La Réunion, Comité Régional d'Etudes et de Sports sous-marins de La Réunion, Inset, O Sea Bleu, Fondation du Crédit Agricole Réunion Mayotte, Fondation d'Entreprises des Mers Australes, Air France, Odyssée Créateur de voyages, Entropie. The financial partners of Andromède Océanologie and Gombessa Expéditions are: Blancpain, Ocean Commitment Blancpain, RGBlue, Keldan, Topstar, Bigblue, Ap Diving, Molecular, Subspace, Nikon, Aqualung, Seacam","grant_number":"","institution_url":""},{"institution":"ARTE, INPP (Institut National de Plongée Professionnelle), Les Gens Bien Production, Région Sud, Fondation IRIS, Fondation Véolia, Agence Française pour la Biodiversité, CNC, Métropole Nice Côte d'Azur, Parc National des Calanques, Océanopolis Brest, Ushuaïa TV, AP divig, Aqualung, Nikon, Syera, HE2B ISEK, Molecular, Seacam, Bigblue, Keldan, Neotek, enlaps, RG Blue, Azoth Systems, Subspace pictures, Topstar","grant_number":"","institution_url":""}]
in Environmental DNA Marine France LaPerouse 2019
f | 1 | { | f | 1 | { |
2 | "author": "[{\"given_name\": \"Marion\", \"name\": \"Muff\", | 2 | "author": "[{\"given_name\": \"Marion\", \"name\": \"Muff\", | ||
3 | \"email\": \"muffm@student.ethz.ch\", \"data_credit\": [], | 3 | \"email\": \"muffm@student.ethz.ch\", \"data_credit\": [], | ||
4 | \"identifier\": \"\", \"affiliation\": \"ETHZ\"}, {\"given_name\": | 4 | \"identifier\": \"\", \"affiliation\": \"ETHZ\"}, {\"given_name\": | ||
5 | \"Melissa\", \"name\": \"Jaquier\", \"email\": | 5 | \"Melissa\", \"name\": \"Jaquier\", \"email\": | ||
6 | \"melissa@jaquier.blue\", \"data_credit\": [], \"identifier\": \"\", | 6 | \"melissa@jaquier.blue\", \"data_credit\": [], \"identifier\": \"\", | ||
7 | \"affiliation\": \"ETHZ\"}, {\"given_name\": \"Virginie\", \"name\": | 7 | \"affiliation\": \"ETHZ\"}, {\"given_name\": \"Virginie\", \"name\": | ||
8 | \"Marques\", \"email\": \"virginie.marques@wsl.ch\", \"data_credit\": | 8 | \"Marques\", \"email\": \"virginie.marques@wsl.ch\", \"data_credit\": | ||
9 | []}, {\"given_name\": \"Laurent\", \"name\": \"Ballesta\", \"email\": | 9 | []}, {\"given_name\": \"Laurent\", \"name\": \"Ballesta\", \"email\": | ||
10 | \"laurent.ballesta@andromede.fr\", \"data_credit\": [], | 10 | \"laurent.ballesta@andromede.fr\", \"data_credit\": [], | ||
11 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | 11 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | ||
12 | {\"given_name\": \"Julie\", \"name\": \"Deter\", \"email\": | 12 | {\"given_name\": \"Julie\", \"name\": \"Deter\", \"email\": | ||
13 | \"julie.deter@andromede-ocean.com\", \"data_credit\": [], | 13 | \"julie.deter@andromede-ocean.com\", \"data_credit\": [], | ||
14 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | 14 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | ||
15 | {\"given_name\": \"Thomas\", \"name\": \"Bockel\", \"email\": | 15 | {\"given_name\": \"Thomas\", \"name\": \"Bockel\", \"email\": | ||
16 | \"thomas.bockel@andromede-ocean.com\", \"data_credit\": [], | 16 | \"thomas.bockel@andromede-ocean.com\", \"data_credit\": [], | ||
17 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | 17 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | ||
18 | {\"given_name\": \"R\\u00e9gis\", \"name\": \"Hocd\\u00e9\", | 18 | {\"given_name\": \"R\\u00e9gis\", \"name\": \"Hocd\\u00e9\", | ||
19 | \"email\": \"regis.hocde@ird.fr\", \"data_credit\": [], | 19 | \"email\": \"regis.hocde@ird.fr\", \"data_credit\": [], | ||
20 | \"identifier\": \"\", \"affiliation\": \"IRD\"}, {\"given_name\": | 20 | \"identifier\": \"\", \"affiliation\": \"IRD\"}, {\"given_name\": | ||
21 | \"Jean-Baptiste\", \"name\": \"Juhel\", \"email\": | 21 | \"Jean-Baptiste\", \"name\": \"Juhel\", \"email\": | ||
22 | \"jeanbaptiste.juhel@gmail.com\", \"data_credit\": [], \"identifier\": | 22 | \"jeanbaptiste.juhel@gmail.com\", \"data_credit\": [], \"identifier\": | ||
23 | \"\", \"affiliation\": \"University of Montpellier\"}, | 23 | \"\", \"affiliation\": \"University of Montpellier\"}, | ||
24 | {\"given_name\": \"Emilie\", \"name\": \"Boulanger\", \"email\": | 24 | {\"given_name\": \"Emilie\", \"name\": \"Boulanger\", \"email\": | ||
25 | \"Emilie.boulanger@hotmail.com\", \"data_credit\": [], \"identifier\": | 25 | \"Emilie.boulanger@hotmail.com\", \"data_credit\": [], \"identifier\": | ||
26 | \"\", \"affiliation\": \"University of Montpellier\"}, | 26 | \"\", \"affiliation\": \"University of Montpellier\"}, | ||
27 | {\"given_name\": \"Nacim\", \"name\": \"Guellati\", \"email\": | 27 | {\"given_name\": \"Nacim\", \"name\": \"Guellati\", \"email\": | ||
28 | \"nacim.guellati.1997@gmail.com\", \"data_credit\": [], | 28 | \"nacim.guellati.1997@gmail.com\", \"data_credit\": [], | ||
29 | \"identifier\": \"\", \"affiliation\": \"University of Montpellier\"}, | 29 | \"identifier\": \"\", \"affiliation\": \"University of Montpellier\"}, | ||
30 | {\"given_name\": \"Andrea\", \"name\": \"Polanco\", \"email\": | 30 | {\"given_name\": \"Andrea\", \"name\": \"Polanco\", \"email\": | ||
31 | \"andrea.polanco@gmail.com\", \"data_credit\": [], \"identifier\": | 31 | \"andrea.polanco@gmail.com\", \"data_credit\": [], \"identifier\": | ||
32 | \"\", \"affiliation\": \"Biodiversa Colombia Foundation, Colombia\"}, | 32 | \"\", \"affiliation\": \"Biodiversa Colombia Foundation, Colombia\"}, | ||
33 | {\"given_name\": \"Alice\", \"name\": \"Valentini\", \"email\": | 33 | {\"given_name\": \"Alice\", \"name\": \"Valentini\", \"email\": | ||
34 | \"alice.valentini@spygen.com\", \"data_credit\": [], \"identifier\": | 34 | \"alice.valentini@spygen.com\", \"data_credit\": [], \"identifier\": | ||
35 | \"\", \"affiliation\": \"SPYGEN\"}, {\"given_name\": \"Tony\", | 35 | \"\", \"affiliation\": \"SPYGEN\"}, {\"given_name\": \"Tony\", | ||
36 | \"name\": \"Dejean\", \"email\": \"tony.dejean@spygen.com\", | 36 | \"name\": \"Dejean\", \"email\": \"tony.dejean@spygen.com\", | ||
37 | \"data_credit\": [], \"identifier\": \"\", \"affiliation\": | 37 | \"data_credit\": [], \"identifier\": \"\", \"affiliation\": | ||
38 | \"SPYGEN\"}, {\"given_name\": \"Stephanie\", \"name\": \"Manel\", | 38 | \"SPYGEN\"}, {\"given_name\": \"Stephanie\", \"name\": \"Manel\", | ||
39 | \"email\": \"stephanie.manel@cefe.cnrs.fr\", \"data_credit\": [], | 39 | \"email\": \"stephanie.manel@cefe.cnrs.fr\", \"data_credit\": [], | ||
40 | \"identifier\": \"\", \"affiliation\": \"EPHE\"}, {\"given_name\": | 40 | \"identifier\": \"\", \"affiliation\": \"EPHE\"}, {\"given_name\": | ||
41 | \"Camille\", \"name\": \"Albouy\", \"email\": | 41 | \"Camille\", \"name\": \"Albouy\", \"email\": | ||
42 | \"camille.albouy@wsl.ch\", \"data_credit\": [], \"identifier\": \"\", | 42 | \"camille.albouy@wsl.ch\", \"data_credit\": [], \"identifier\": \"\", | ||
43 | \"affiliation\": \"Unit of Land Change Science, 7u Federal Research | 43 | \"affiliation\": \"Unit of Land Change Science, 7u Federal Research | ||
44 | Institute WSL, Birmensdorf, Switzerland\"}, {\"given_name\": | 44 | Institute WSL, Birmensdorf, Switzerland\"}, {\"given_name\": | ||
45 | \"Patrick\", \"name\": \"Durville\", \"email\": | 45 | \"Patrick\", \"name\": \"Durville\", \"email\": | ||
46 | \"patrick.durville.galaxea@gmail.com\", \"data_credit\": [], | 46 | \"patrick.durville.galaxea@gmail.com\", \"data_credit\": [], | ||
47 | \"identifier\": \"\", \"affiliation\": \"GALAXEA\"}, {\"given_name\": | 47 | \"identifier\": \"\", \"affiliation\": \"GALAXEA\"}, {\"given_name\": | ||
48 | \"David\", \"name\": \"Mouillot\", \"email\": | 48 | \"David\", \"name\": \"Mouillot\", \"email\": | ||
49 | \"david.mouillot@umontpellier.fr\", \"data_credit\": [], | 49 | \"david.mouillot@umontpellier.fr\", \"data_credit\": [], | ||
50 | \"identifier\": \"\", \"affiliation\": \"University of Montpellier\"}, | 50 | \"identifier\": \"\", \"affiliation\": \"University of Montpellier\"}, | ||
51 | {\"given_name\": \"Florian\", \"name\": \"Holon\", \"email\": | 51 | {\"given_name\": \"Florian\", \"name\": \"Holon\", \"email\": | ||
52 | \"florian.holon@andromede-ocean.com\", \"data_credit\": [], | 52 | \"florian.holon@andromede-ocean.com\", \"data_credit\": [], | ||
53 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | 53 | \"identifier\": \"\", \"affiliation\": \"Andromede\"}, | ||
54 | {\"given_name\": \"Loic\", \"name\": \"Pellissier\", \"email\": | 54 | {\"given_name\": \"Loic\", \"name\": \"Pellissier\", \"email\": | ||
55 | \"loic.pellissier@wsl.ch\", \"data_credit\": [], \"identifier\": | 55 | \"loic.pellissier@wsl.ch\", \"data_credit\": [], \"identifier\": | ||
56 | \"0000-0002-2289-8259\", \"affiliation\": \"Landscape Ecology, | 56 | \"0000-0002-2289-8259\", \"affiliation\": \"Landscape Ecology, | ||
57 | Institute of Terrestrial Ecosystems, ETH Z\\u00fcrich, 8049 | 57 | Institute of Terrestrial Ecosystems, ETH Z\\u00fcrich, 8049 | ||
58 | Z\\u00fcrich, Switzerland\"}]", | 58 | Z\\u00fcrich, Switzerland\"}]", | ||
59 | "author_email": null, | 59 | "author_email": null, | ||
60 | "creator_user_id": "382d8fab-f378-477d-88f6-26f77aee50d8", | 60 | "creator_user_id": "382d8fab-f378-477d-88f6-26f77aee50d8", | ||
61 | "date": | 61 | "date": | ||
62 | \":\"created\",\"date\":\"2019-10-27\",\"end_date\":\"2019-11-05\"}]", | 62 | \":\"created\",\"date\":\"2019-10-27\",\"end_date\":\"2019-11-05\"}]", | ||
63 | "doi": "10.16904/envidat.567", | 63 | "doi": "10.16904/envidat.567", | ||
64 | "extras": [ | 64 | "extras": [ | ||
65 | { | 65 | { | ||
66 | "key": "edna_type", | 66 | "key": "edna_type", | ||
67 | "value": "marine" | 67 | "value": "marine" | ||
68 | }, | 68 | }, | ||
69 | { | 69 | { | ||
70 | "key": "metadata", | 70 | "key": "metadata", | ||
71 | "value": | 71 | "value": | ||
72 | ma_fr/ma_fr_lapero_2019/metadata/metadata_field_ma_fr_lapero_2019.csv" | 72 | ma_fr/ma_fr_lapero_2019/metadata/metadata_field_ma_fr_lapero_2019.csv" | ||
73 | } | 73 | } | ||
74 | ], | 74 | ], | ||
75 | "funding": "[{\"institution\":\"Internal Funding ELE group | 75 | "funding": "[{\"institution\":\"Internal Funding ELE group | ||
76 | \",\"grant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\" | 76 | \",\"grant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\" | ||
77 | Andromede Oceanologie\",\"grant_number\":\"GOMBESSA | 77 | Andromede Oceanologie\",\"grant_number\":\"GOMBESSA | ||
78 | 5\",\"institution_url\":\"\"},{\"institution\":\"ANR labcom | 78 | 5\",\"institution_url\":\"\"},{\"institution\":\"ANR labcom | ||
79 | 2\",\"grant_number\":\"InToSea (Innovative Tools under the Sea) joint | 79 | 2\",\"grant_number\":\"InToSea (Innovative Tools under the Sea) joint | ||
80 | laboratory\",\"institution_url\":\"\"},{\"institution\":\"Manufacture | 80 | laboratory\",\"institution_url\":\"\"},{\"institution\":\"Manufacture | ||
81 | de Haute Horlogerie Suisse Blancpain and Blancpain Ocean | 81 | de Haute Horlogerie Suisse Blancpain and Blancpain Ocean | ||
82 | rant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"Prince | 82 | rant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"Prince | ||
83 | Albert II de Monaco | 83 | Albert II de Monaco | ||
84 | \":\"\",\"institution_url\":\"\"},{\"institution\":\"Soci\u00e9t\u00e9 | 84 | \":\"\",\"institution_url\":\"\"},{\"institution\":\"Soci\u00e9t\u00e9 | ||
85 | des explorations de | 85 | des explorations de | ||
86 | rant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"French | 86 | rant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"French | ||
87 | Water | 87 | Water | ||
88 | nt_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"Ministry | 88 | nt_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"Ministry | ||
89 | of Overseas France\",\"grant_number\":\"Convergence and Transformation | 89 | of Overseas France\",\"grant_number\":\"Convergence and Transformation | ||
90 | Contract 2019-2022, measure 3.5.1.1 of the \u201cResilient | 90 | Contract 2019-2022, measure 3.5.1.1 of the \u201cResilient | ||
91 | Territories\u201d | 91 | Territories\u201d | ||
92 | section\",\"institution_url\":\"\"},{\"institution\":\"Vie | 92 | section\",\"institution_url\":\"\"},{\"institution\":\"Vie | ||
93 | Oc\u00e9ane, Aquarium de La R\u00e9union, Comit\u00e9 R\u00e9gional | 93 | Oc\u00e9ane, Aquarium de La R\u00e9union, Comit\u00e9 R\u00e9gional | ||
94 | d'Etudes et de Sports sous-marins de La R\u00e9union, Inset, O Sea | 94 | d'Etudes et de Sports sous-marins de La R\u00e9union, Inset, O Sea | ||
95 | Bleu, Fondation du Cr\u00e9dit Agricole R\u00e9union Mayotte, | 95 | Bleu, Fondation du Cr\u00e9dit Agricole R\u00e9union Mayotte, | ||
96 | Fondation d'Entreprises des Mers Australes, Air France, Odyss\u00e9e | 96 | Fondation d'Entreprises des Mers Australes, Air France, Odyss\u00e9e | ||
97 | Cr\u00e9ateur de voyages, Entropie. The financial partners of | 97 | Cr\u00e9ateur de voyages, Entropie. The financial partners of | ||
98 | Androm\u00e8de Oc\u00e9anologie and Gombessa Exp\u00e9ditions are: | 98 | Androm\u00e8de Oc\u00e9anologie and Gombessa Exp\u00e9ditions are: | ||
99 | Blancpain, Ocean Commitment Blancpain, RGBlue, Keldan, Topstar, | 99 | Blancpain, Ocean Commitment Blancpain, RGBlue, Keldan, Topstar, | ||
100 | Bigblue, Ap Diving, Molecular, Subspace, Nikon, Aqualung, | 100 | Bigblue, Ap Diving, Molecular, Subspace, Nikon, Aqualung, | ||
n | n | 101 | grant_number\":\"\",\"institution_url\":\"\"},{\"institution\":\"ARTE, | ||
102 | INPP (Institut National de Plong\u00e9e Professionnelle), Les Gens | ||||
103 | Bien Production, R\u00e9gion Sud, Fondation IRIS, Fondation | ||||
104 | V\u00e9olia, Agence Fran\u00e7aise pour la Biodiversit\u00e9, CNC, | ||||
105 | M\u00e9tropole Nice C\u00f4te d'Azur, Parc National des Calanques, | ||||
106 | Oc\u00e9anopolis Brest, Ushua\u00efa TV, AP divig, Aqualung, Nikon, | ||||
107 | Syera, HE2B ISEK, Molecular, Seacam, Bigblue, Keldan, Neotek, enlaps, | ||||
108 | RG Blue, Azoth Systems, Subspace pictures, | ||||
101 | Seacam\",\"grant_number\":\"\",\"institution_url\":\"\"}]", | 109 | Topstar\",\"grant_number\":\"\",\"institution_url\":\"\"}]", | ||
102 | "groups": [ | 110 | "groups": [ | ||
103 | { | 111 | { | ||
104 | "description": "", | 112 | "description": "", | ||
105 | "display_name": "eDNA", | 113 | "display_name": "eDNA", | ||
106 | "id": "c2176351-3002-4d7a-b2aa-d8509f7dbfbe", | 114 | "id": "c2176351-3002-4d7a-b2aa-d8509f7dbfbe", | ||
107 | "image_display_url": "", | 115 | "image_display_url": "", | ||
108 | "name": "edna", | 116 | "name": "edna", | ||
109 | "title": "eDNA" | 117 | "title": "eDNA" | ||
110 | } | 118 | } | ||
111 | ], | 119 | ], | ||
112 | "id": "27331019-15d4-41c5-b9e4-866c6bc0a96a", | 120 | "id": "27331019-15d4-41c5-b9e4-866c6bc0a96a", | ||
113 | "isopen": true, | 121 | "isopen": true, | ||
114 | "license_id": "cc-by", | 122 | "license_id": "cc-by", | ||
115 | "license_title": "Creative Commons Attribution", | 123 | "license_title": "Creative Commons Attribution", | ||
116 | "license_url": "https://creativecommons.org/licenses/by/4.0/", | 124 | "license_url": "https://creativecommons.org/licenses/by/4.0/", | ||
117 | "maintainer": | 125 | "maintainer": | ||
118 | e.marques@wsl.ch\",\"given_name\":\"Virginie\",\"name\":\"Marques\"}", | 126 | e.marques@wsl.ch\",\"given_name\":\"Virginie\",\"name\":\"Marques\"}", | ||
119 | "maintainer_email": null, | 127 | "maintainer_email": null, | ||
120 | "metadata_created": "2024-12-10T15:08:00.727653", | 128 | "metadata_created": "2024-12-10T15:08:00.727653", | ||
t | 121 | "metadata_modified": "2024-12-12T13:52:09.805308", | t | 129 | "metadata_modified": "2024-12-12T13:52:30.319039", |
122 | "name": "environmental-dna-marine-france-laperouse-2019", | 130 | "name": "environmental-dna-marine-france-laperouse-2019", | ||
123 | "notes": "Fish environmental DNA data set collected in the shallow | 131 | "notes": "Fish environmental DNA data set collected in the shallow | ||
124 | seamount of La P\u00e9rouse located between Madagascar and | 132 | seamount of La P\u00e9rouse located between Madagascar and | ||
125 | R\u00e9union Island \n\n\nIn 2019, we sampled the shallow seamount of | 133 | R\u00e9union Island \n\n\nIn 2019, we sampled the shallow seamount of | ||
126 | La P\u00e9rouse, located between Madagascar and R\u00e9union Island in | 134 | La P\u00e9rouse, located between Madagascar and R\u00e9union Island in | ||
127 | the WIO. La P\u00e9rouse is an extinct volcano with a summit depth at | 135 | the WIO. La P\u00e9rouse is an extinct volcano with a summit depth at | ||
128 | 60\u2009m below the sea surface. The plateau of the summit has a | 136 | 60\u2009m below the sea surface. The plateau of the summit has a | ||
129 | maximum length of 12\u2009km and a maximum width of 4 km. One side of | 137 | maximum length of 12\u2009km and a maximum width of 4 km. One side of | ||
130 | the seamount might have collapsed in the past, leading to a less | 138 | the seamount might have collapsed in the past, leading to a less | ||
131 | common crescent-shaped summit. The abyssal plains that surround this | 139 | common crescent-shaped summit. The abyssal plains that surround this | ||
132 | isolated pinnacle are at a depth of 5000\u2009m. Despite its proximity | 140 | isolated pinnacle are at a depth of 5000\u2009m. Despite its proximity | ||
133 | to R\u00e9union Island (160\u2009km northwest), La P\u00e9rouse and | 141 | to R\u00e9union Island (160\u2009km northwest), La P\u00e9rouse and | ||
134 | its surroundings are still poorly studied.\n\nTo sample eDNA in this | 142 | its surroundings are still poorly studied.\n\nTo sample eDNA in this | ||
135 | location we used a submersible pump (Subspace, Geneva, Switzerland; | 143 | location we used a submersible pump (Subspace, Geneva, Switzerland; | ||
136 | nominal flow of ~\u20091.0 L/min) to collect samples at various depths | 144 | nominal flow of ~\u20091.0 L/min) to collect samples at various depths | ||
137 | during close circuit rebreather dives. The pump has an internal | 145 | during close circuit rebreather dives. The pump has an internal | ||
138 | battery and can be activated underwater allowing in situ filtration | 146 | battery and can be activated underwater allowing in situ filtration | ||
139 | directly at the targeted habitat and depth. The filtration lasted for | 147 | directly at the targeted habitat and depth. The filtration lasted for | ||
140 | 30\u2009min to collect a total water volume of ~\u200930\u2009L. | 148 | 30\u2009min to collect a total water volume of ~\u200930\u2009L. | ||
141 | During close circuit rebreather dives, water samples from various | 149 | During close circuit rebreather dives, water samples from various | ||
142 | depths, ranging from 60 to 140\u2009m below the sea surface, were | 150 | depths, ranging from 60 to 140\u2009m below the sea surface, were | ||
143 | collected using only the Submersible method (eight stations: no | 151 | collected using only the Submersible method (eight stations: no | ||
144 | replicates). Out of the eight water samples, six were collected during | 152 | replicates). Out of the eight water samples, six were collected during | ||
145 | the day, while two were collected at night (IS2_1 at 62\u2009m and | 153 | the day, while two were collected at night (IS2_1 at 62\u2009m and | ||
146 | IS7_1 at 100\u2013125\u2009m). We applied this filtration protocols to | 154 | IS7_1 at 100\u2013125\u2009m). We applied this filtration protocols to | ||
147 | collect and filter water throughout a VigiDNA\u00ae 0.2 \u03bcM | 155 | collect and filter water throughout a VigiDNA\u00ae 0.2 \u03bcM | ||
148 | cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) | 156 | cross-flow filtration capsule (SPYGEN, le Bourget du Lac, France) | ||
149 | using disposable sterile tubing for each filtration capsule. After the | 157 | using disposable sterile tubing for each filtration capsule. After the | ||
150 | filtration process, the remaining water in the capsules was emptied. | 158 | filtration process, the remaining water in the capsules was emptied. | ||
151 | The capsules were then filled with 80\u2009ml of lysis conservation | 159 | The capsules were then filled with 80\u2009ml of lysis conservation | ||
152 | buffer (CL1 buffer SPYGEN, le Bourget du Lac, France) and stored at | 160 | buffer (CL1 buffer SPYGEN, le Bourget du Lac, France) and stored at | ||
153 | room temperature in the dark. At La P\u00e9rouse, a total of eight | 161 | room temperature in the dark. At La P\u00e9rouse, a total of eight | ||
154 | water samples were collected during the MONT LA P\u00c9ROUSE | 162 | water samples were collected during the MONT LA P\u00c9ROUSE | ||
155 | expedition (https://gombessa-expeditions.com/mont-la-perouse/) on | 163 | expedition (https://gombessa-expeditions.com/mont-la-perouse/) on | ||
156 | board the ship La Curieuse to the seamount La P\u00e9rouse from | 164 | board the ship La Curieuse to the seamount La P\u00e9rouse from | ||
157 | October 27th to November 5th 2019. We followed a strict contamination | 165 | October 27th to November 5th 2019. We followed a strict contamination | ||
158 | control protocol in both field and laboratory stages. Each water | 166 | control protocol in both field and laboratory stages. Each water | ||
159 | sample processing included the use of disposable gloves and single-use | 167 | sample processing included the use of disposable gloves and single-use | ||
160 | filtration equipment to avoid any risk of contamination. Libraries | 168 | filtration equipment to avoid any risk of contamination. Libraries | ||
161 | were prepared with ligation using the MetaFast protocol | 169 | were prepared with ligation using the MetaFast protocol | ||
162 | (Fasteris).\n\nData content: \n\t* rawdata/: contains the raw reads | 170 | (Fasteris).\n\nData content: \n\t* rawdata/: contains the raw reads | ||
163 | for each individual sample. One archive contains the paired-end reads | 171 | for each individual sample. One archive contains the paired-end reads | ||
164 | specified by the _R1 or _R2 suffix as well as individually tagged PCR | 172 | specified by the _R1 or _R2 suffix as well as individually tagged PCR | ||
165 | replicates (if available) together with an archive containing all | 173 | replicates (if available) together with an archive containing all | ||
166 | extraction and PCR blank samples of the library. Reads have been | 174 | extraction and PCR blank samples of the library. Reads have been | ||
167 | demultiplexed using cutadapt but not trimmed, individual | 175 | demultiplexed using cutadapt but not trimmed, individual | ||
168 | demultiplexing tags and primers remain present in the sequences. | 176 | demultiplexing tags and primers remain present in the sequences. | ||
169 | \n\t* taxadata/: contains the table with all detected taxonomy for | 177 | \n\t* taxadata/: contains the table with all detected taxonomy for | ||
170 | each sample after bioinformatic processing (see Polanco et al. 2020 | 178 | each sample after bioinformatic processing (see Polanco et al. 2020 | ||
171 | for details; https://doi.org/10.1002/edn3.140) and associated field | 179 | for details; https://doi.org/10.1002/edn3.140) and associated field | ||
172 | metadata. \n\t* metadata/: contains two metadata files, one related to | 180 | metadata. \n\t* metadata/: contains two metadata files, one related to | ||
173 | the data collected in the field for each filter, and the second | 181 | the data collected in the field for each filter, and the second | ||
174 | related to the sequencing process in the lab (including the tag | 182 | related to the sequencing process in the lab (including the tag | ||
175 | sequence, library name, and marker information for each sample)\n", | 183 | sequence, library name, and marker information for each sample)\n", | ||
176 | "num_resources": 1, | 184 | "num_resources": 1, | ||
177 | "num_tags": 7, | 185 | "num_tags": 7, | ||
178 | "organization": { | 186 | "organization": { | ||
179 | "approval_status": "approved", | 187 | "approval_status": "approved", | ||
180 | "created": "2018-12-01T11:59:01.791513", | 188 | "created": "2018-12-01T11:59:01.791513", | ||
181 | "description": "We are an international research team with diverse | 189 | "description": "We are an international research team with diverse | ||
182 | scientific expertise and backgrounds, connected by the goal to | 190 | scientific expertise and backgrounds, connected by the goal to | ||
183 | understand biodiversity. We study the mechanisms that shape | 191 | understand biodiversity. We study the mechanisms that shape | ||
184 | biodiversity patterns across spatial and temporal scales - in both | 192 | biodiversity patterns across spatial and temporal scales - in both | ||
185 | terrestrial and aquatic ecosystems -\u200bsuch as mountain ranges and | 193 | terrestrial and aquatic ecosystems -\u200bsuch as mountain ranges and | ||
186 | tropical reefs. We use an interdisciplinary approach, whereby we | 194 | tropical reefs. We use an interdisciplinary approach, whereby we | ||
187 | bridge ecology, evolution, Earth history and global change.\r\nTo make | 195 | bridge ecology, evolution, Earth history and global change.\r\nTo make | ||
188 | these connections, we collect data through biological monitoring, | 196 | these connections, we collect data through biological monitoring, | ||
189 | environmental DNA methods, remote sensing, and field sampling, and use | 197 | environmental DNA methods, remote sensing, and field sampling, and use | ||
190 | these data to answer questions with statistical and | 198 | these data to answer questions with statistical and | ||
191 | process-\u200bbased models of biological diversity.\r\nOur group is | 199 | process-\u200bbased models of biological diversity.\r\nOur group is | ||
192 | affiliated with ETH and WSL, but is also associated with Agroscope, | 200 | affiliated with ETH and WSL, but is also associated with Agroscope, | ||
193 | EAWAG, the European Joint Research Centre and Vogelwarte.", | 201 | EAWAG, the European Joint Research Centre and Vogelwarte.", | ||
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199 | "state": "active", | 207 | "state": "active", | ||
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206 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | 214 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | ||
207 | "publication_state": "published", | 215 | "publication_state": "published", | ||
208 | "related_publications": "Muff, Marion, et al. \"Environmental DNA | 216 | "related_publications": "Muff, Marion, et al. \"Environmental DNA | ||
209 | highlights fish biodiversity in mesophotic ecosystems.\" Environ. DNA, | 217 | highlights fish biodiversity in mesophotic ecosystems.\" Environ. DNA, | ||
210 | vol. 5, no. 1, 1 Jan. 2023, pp. 56-72, doi:10.1002/edn3.358.", | 218 | vol. 5, no. 1, 1 Jan. 2023, pp. 56-72, doi:10.1002/edn3.358.", | ||
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243 | "url_type": null | 251 | "url_type": null | ||
244 | } | 252 | } | ||
245 | ], | 253 | ], | ||
246 | "spatial": | 254 | "spatial": | ||
247 | ies\":{\"name\":\"environmental-dna-marine-france-laperouse-2019\"}}", | 255 | ies\":{\"name\":\"environmental-dna-marine-france-laperouse-2019\"}}", | ||
248 | "state": "active", | 256 | "state": "active", | ||
249 | "subtitle": "", | 257 | "subtitle": "", | ||
250 | "tags": [ | 258 | "tags": [ | ||
251 | { | 259 | { | ||
252 | "display_name": "CORAL REEF", | 260 | "display_name": "CORAL REEF", | ||
253 | "id": "63718352-c39f-4313-9ca3-bdb1d680dbef", | 261 | "id": "63718352-c39f-4313-9ca3-bdb1d680dbef", | ||
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269 | "state": "active", | 277 | "state": "active", | ||
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274 | "id": "064cc0db-d544-453d-98f9-54b9f46fba27", | 282 | "id": "064cc0db-d544-453d-98f9-54b9f46fba27", | ||
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279 | { | 287 | { | ||
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281 | "id": "b5062b96-2335-4fde-b7e5-0b615d947d89", | 289 | "id": "b5062b96-2335-4fde-b7e5-0b615d947d89", | ||
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284 | "vocabulary_id": null | 292 | "vocabulary_id": null | ||
285 | }, | 293 | }, | ||
286 | { | 294 | { | ||
287 | "display_name": "MARINE", | 295 | "display_name": "MARINE", | ||
288 | "id": "1f05d702-5580-40ac-9c9a-47127e050fa7", | 296 | "id": "1f05d702-5580-40ac-9c9a-47127e050fa7", | ||
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290 | "state": "active", | 298 | "state": "active", | ||
291 | "vocabulary_id": null | 299 | "vocabulary_id": null | ||
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294 | "display_name": "TELEO", | 302 | "display_name": "TELEO", | ||
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302 | "type": "dataset", | 310 | "type": "dataset", | ||
303 | "url": null | 311 | "url": null | ||
304 | } | 312 | } |