Changes
On April 29, 2021 at 7:01:24 AM UTC, Attilio Rizzoli:
-
Changed value of field
resource_size
of resource Results of the molecular analyses conducted on the sampled common alder trees in Origlio, Camorino, and Montalbano. to{"size_units": "kb", "size_value": ""}
(previously{"size_value": "", "size_units": "kb"}
) in Alnus glutinosa (L.) Gaertn. and Orientus ishidae (Matsumura, 1902) share phytoplasma genotypes linked to the “Flavescence dorée” epidemics -
Changed value of field
restricted
of resource Results of the molecular analyses conducted on the sampled common alder trees in Origlio, Camorino, and Montalbano. to{"allowed_users": "", "level": "public", "shared_secret": ""}
(previously{"level": "same_organization", "allowed_users": "", "shared_secret": ""}
) in Alnus glutinosa (L.) Gaertn. and Orientus ishidae (Matsumura, 1902) share phytoplasma genotypes linked to the “Flavescence dorée” epidemics
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6 | \"given_name\": \"Attilio\", \"identifier\": \"0000-0002-5465-0506\", | 6 | \"given_name\": \"Attilio\", \"identifier\": \"0000-0002-5465-0506\", | ||
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22 | \"name\": \"Conedera\"}, {\"affiliation\": \"CREA, Council for | 22 | \"name\": \"Conedera\"}, {\"affiliation\": \"CREA, Council for | ||
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26 | \"email\": \"luisa.filippin@crea.gov.it\", \"given_name\": \"Luisa\", | 26 | \"email\": \"luisa.filippin@crea.gov.it\", \"given_name\": \"Luisa\", | ||
27 | \"identifier\": \"0000-0001-7690-9147\", \"name\": \"Filippin\"}, | 27 | \"identifier\": \"0000-0001-7690-9147\", \"name\": \"Filippin\"}, | ||
28 | {\"affiliation\": \"CREA, Council for Agriculture Research and | 28 | {\"affiliation\": \"CREA, Council for Agriculture Research and | ||
29 | Economics, Research Centre for Viticulture and Enology\", | 29 | Economics, Research Centre for Viticulture and Enology\", | ||
30 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | 30 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | ||
31 | [\"publication\", \"supervision\"], \"email\": | 31 | [\"publication\", \"supervision\"], \"email\": | ||
32 | \"elisa.angelini@crea.gov.it\", \"given_name\": \"Elisa\", | 32 | \"elisa.angelini@crea.gov.it\", \"given_name\": \"Elisa\", | ||
33 | \"identifier\": \"0000-0002-2638-6584\", \"name\": \"Angelini\"}]", | 33 | \"identifier\": \"0000-0002-2638-6584\", \"name\": \"Angelini\"}]", | ||
34 | "author_email": null, | 34 | "author_email": null, | ||
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36 | "date": "[{\"date\": \"2019-06-01\", \"date_type\": \"collected\", | 36 | "date": "[{\"date\": \"2019-06-01\", \"date_type\": \"collected\", | ||
37 | \"end_date\": \"2020-01-13\"}]", | 37 | \"end_date\": \"2020-01-13\"}]", | ||
38 | "doi": "10.16904/envidat.221", | 38 | "doi": "10.16904/envidat.221", | ||
39 | "funding": "[{\"grant_number\": \"627001075\", \"institution\": | 39 | "funding": "[{\"grant_number\": \"627001075\", \"institution\": | ||
40 | \"Swiss Federal Office for Agriculture (FOAG)\", \"institution_url\": | 40 | \"Swiss Federal Office for Agriculture (FOAG)\", \"institution_url\": | ||
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45 | "language": "en", | 45 | "language": "en", | ||
46 | "license_id": "wsl-data", | 46 | "license_id": "wsl-data", | ||
47 | "license_title": "WSL Data Policy", | 47 | "license_title": "WSL Data Policy", | ||
48 | "license_url": | 48 | "license_url": | ||
49 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | 49 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | ||
50 | "maintainer": "{\"affiliation\": \"WSL\", \"email\": | 50 | "maintainer": "{\"affiliation\": \"WSL\", \"email\": | ||
51 | \"attilio.rizzoli@wsl.ch\", \"given_name\": \"Attilio\", | 51 | \"attilio.rizzoli@wsl.ch\", \"given_name\": \"Attilio\", | ||
52 | \"identifier\": \"0000-0002-5465-0506\", \"name\": \"Rizzoli\"}", | 52 | \"identifier\": \"0000-0002-5465-0506\", \"name\": \"Rizzoli\"}", | ||
53 | "maintainer_email": null, | 53 | "maintainer_email": null, | ||
54 | "metadata_created": "2021-04-27T05:58:27.043151", | 54 | "metadata_created": "2021-04-27T05:58:27.043151", | ||
n | 55 | "metadata_modified": "2021-04-29T07:01:11.590287", | n | 55 | "metadata_modified": "2021-04-29T07:01:24.681062", |
56 | "name": "alnus-glutinosa-orientus-ishidae-flavescence-doree", | 56 | "name": "alnus-glutinosa-orientus-ishidae-flavescence-doree", | ||
57 | "notes": "Flavescence dor\u00e9e (FD) is a grapevine disease caused | 57 | "notes": "Flavescence dor\u00e9e (FD) is a grapevine disease caused | ||
58 | by associated phytoplasmas (FDp), which are epidemically spread by | 58 | by associated phytoplasmas (FDp), which are epidemically spread by | ||
59 | their main vector Scaphoideus titanus. The possible roles of | 59 | their main vector Scaphoideus titanus. The possible roles of | ||
60 | alternative and secondary FDp plant hosts and vectors have gained | 60 | alternative and secondary FDp plant hosts and vectors have gained | ||
61 | interest to better understand the FDp ecology and epidemiology. A | 61 | interest to better understand the FDp ecology and epidemiology. A | ||
62 | survey conducted in the surroundings of a vineyard in the Swiss | 62 | survey conducted in the surroundings of a vineyard in the Swiss | ||
63 | Southern Alps aimed at studying the possible epidemiological role of | 63 | Southern Alps aimed at studying the possible epidemiological role of | ||
64 | the FDp secondary vector Orientus ishidae and the FDp host plant Alnus | 64 | the FDp secondary vector Orientus ishidae and the FDp host plant Alnus | ||
65 | glutinosa is reported. \r\n\r\nData used for the | 65 | glutinosa is reported. \r\n\r\nData used for the | ||
66 | publication.\r\nInsects were captured by using a sweeping net (on | 66 | publication.\r\nInsects were captured by using a sweeping net (on | ||
67 | common alder trees) and yellow sticky traps (Rebell Giallo, Andermatt | 67 | common alder trees) and yellow sticky traps (Rebell Giallo, Andermatt | ||
68 | Biocontrol AG, Switzerland) placed in the vineyard canopy. Insects | 68 | Biocontrol AG, Switzerland) placed in the vineyard canopy. Insects | ||
69 | were later determined and selected for molecular | 69 | were later determined and selected for molecular | ||
70 | analyses.\r\nGrapevines and common alder samples were collected using | 70 | analyses.\r\nGrapevines and common alder samples were collected using | ||
71 | the standard techniques. The molecular analyses were conducted in | 71 | the standard techniques. The molecular analyses were conducted in | ||
72 | order to identify samples infected by the Flavescence dor\u00e9e | 72 | order to identify samples infected by the Flavescence dor\u00e9e | ||
73 | phytoplasma (16SrV-p) and the Bois Noir phytoplasma (16SrXII-p). A | 73 | phytoplasma (16SrV-p) and the Bois Noir phytoplasma (16SrXII-p). A | ||
74 | selection of the infected sampled were further characterized by map | 74 | selection of the infected sampled were further characterized by map | ||
75 | genotype and sequenced in order to compare the genotypes in insects, | 75 | genotype and sequenced in order to compare the genotypes in insects, | ||
76 | grapevines and common alder trees.\r\n", | 76 | grapevines and common alder trees.\r\n", | ||
77 | "num_resources": 7, | 77 | "num_resources": 7, | ||
78 | "num_tags": 10, | 78 | "num_tags": 10, | ||
79 | "organization": { | 79 | "organization": { | ||
80 | "approval_status": "approved", | 80 | "approval_status": "approved", | ||
81 | "created": "2018-09-11T08:41:19.049947", | 81 | "created": "2018-09-11T08:41:19.049947", | ||
82 | "description": "The name Insubria derives from a pre-Roman | 82 | "description": "The name Insubria derives from a pre-Roman | ||
83 | population occupying the geographical area between the Po River and | 83 | population occupying the geographical area between the Po River and | ||
84 | the Monte Ceneri. In the present time the name is used for indicating | 84 | the Monte Ceneri. In the present time the name is used for indicating | ||
85 | the region extending from Lago d'Orta in the West, to Lago di Garda in | 85 | the region extending from Lago d'Orta in the West, to Lago di Garda in | ||
86 | the East, which is characterized by a mild and wet climate. Due to its | 86 | the East, which is characterized by a mild and wet climate. Due to its | ||
87 | particular biogeographical position, this region does not only host a | 87 | particular biogeographical position, this region does not only host a | ||
88 | highly diverse flora and fauna with important endemisms, but also a | 88 | highly diverse flora and fauna with important endemisms, but also a | ||
89 | great cultural and historical diversity. In the recent past, the area | 89 | great cultural and historical diversity. In the recent past, the area | ||
90 | has been exposed to important socio-cultural changes with dramatic | 90 | has been exposed to important socio-cultural changes with dramatic | ||
91 | effects on the land use and on the cultural and biological diversity | 91 | effects on the land use and on the cultural and biological diversity | ||
92 | in space and time. For these reasons, Insubria can be considered an | 92 | in space and time. For these reasons, Insubria can be considered an | ||
93 | ideal model region to assess the effects of global change on cultural | 93 | ideal model region to assess the effects of global change on cultural | ||
94 | and biotic diversity and ecosystem function.\r\n\r\nThe Insubric | 94 | and biotic diversity and ecosystem function.\r\n\r\nThe Insubric | ||
95 | Ecosystems Group aims understanding the ecological and cultural | 95 | Ecosystems Group aims understanding the ecological and cultural | ||
96 | component of such biogeographic transition regions and their role in | 96 | component of such biogeographic transition regions and their role in | ||
97 | driving biological and cultural diversity. Dynamics and changes are | 97 | driving biological and cultural diversity. Dynamics and changes are | ||
98 | investigated from geo-historical perspectives and at different biotic | 98 | investigated from geo-historical perspectives and at different biotic | ||
99 | levels (from the species, to the population and community composition) | 99 | levels (from the species, to the population and community composition) | ||
100 | and interpreted in the light of different socio-cultural | 100 | and interpreted in the light of different socio-cultural | ||
101 | context.\r\n\r\nMain research topics are the chestnut forests and | 101 | context.\r\n\r\nMain research topics are the chestnut forests and | ||
102 | cultivation, forest fire history and ecology, neophytes, biodiversity | 102 | cultivation, forest fire history and ecology, neophytes, biodiversity | ||
103 | in disturbed and urban ecosystems.", | 103 | in disturbed and urban ecosystems.", | ||
104 | "id": "23509083-845f-43f9-8aae-67cdd2800779", | 104 | "id": "23509083-845f-43f9-8aae-67cdd2800779", | ||
105 | "image_url": "2018-09-11-064425.506670LogoWSL.svg", | 105 | "image_url": "2018-09-11-064425.506670LogoWSL.svg", | ||
106 | "is_organization": true, | 106 | "is_organization": true, | ||
107 | "name": "insubric-ecosystems", | 107 | "name": "insubric-ecosystems", | ||
108 | "state": "active", | 108 | "state": "active", | ||
109 | "title": "Insubric Ecosystems", | 109 | "title": "Insubric Ecosystems", | ||
110 | "type": "organization" | 110 | "type": "organization" | ||
111 | }, | 111 | }, | ||
112 | "owner_org": "23509083-845f-43f9-8aae-67cdd2800779", | 112 | "owner_org": "23509083-845f-43f9-8aae-67cdd2800779", | ||
113 | "private": false, | 113 | "private": false, | ||
114 | "publication": "{\"publication_year\": \"2021\", \"publisher\": | 114 | "publication": "{\"publication_year\": \"2021\", \"publisher\": | ||
115 | \"EnviDat\"}", | 115 | \"EnviDat\"}", | ||
116 | "publication_state": "pub_pending", | 116 | "publication_state": "pub_pending", | ||
117 | "related_datasets": "", | 117 | "related_datasets": "", | ||
118 | "related_publications": "", | 118 | "related_publications": "", | ||
119 | "relationships_as_object": [], | 119 | "relationships_as_object": [], | ||
120 | "relationships_as_subject": [], | 120 | "relationships_as_subject": [], | ||
121 | "resource_type": "datapaper", | 121 | "resource_type": "datapaper", | ||
122 | "resource_type_general": "datapaper", | 122 | "resource_type_general": "datapaper", | ||
123 | "resources": [ | 123 | "resources": [ | ||
124 | { | 124 | { | ||
125 | "cache_last_updated": null, | 125 | "cache_last_updated": null, | ||
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127 | "created": "2021-04-27T06:00:48.027710", | 127 | "created": "2021-04-27T06:00:48.027710", | ||
128 | "description": "Characteristics of the monitored vineyards, | 128 | "description": "Characteristics of the monitored vineyards, | ||
129 | including the number of sampled common alders and the number of yellow | 129 | including the number of sampled common alders and the number of yellow | ||
130 | sticky traps (YST) placed in the canopy.", | 130 | sticky traps (YST) placed in the canopy.", | ||
131 | "doi": "", | 131 | "doi": "", | ||
132 | "format": ".csv", | 132 | "format": ".csv", | ||
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156 | "created": "2021-04-27T06:02:06.784956", | 156 | "created": "2021-04-27T06:02:06.784956", | ||
157 | "description": "Features of the phytoplasma isolates analyzed in | 157 | "description": "Features of the phytoplasma isolates analyzed in | ||
158 | this work and reference strains, together with relative GenBank | 158 | this work and reference strains, together with relative GenBank | ||
159 | accession numbers and host.", | 159 | accession numbers and host.", | ||
160 | "doi": "", | 160 | "doi": "", | ||
161 | "format": ".csv", | 161 | "format": ".csv", | ||
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185 | "created": "2021-04-27T06:03:11.790819", | 185 | "created": "2021-04-27T06:03:11.790819", | ||
186 | "description": "Leafhoppers captured on yellow sticky traps | 186 | "description": "Leafhoppers captured on yellow sticky traps | ||
187 | (YST) placed in vineyards and sampled for molecular analyses. Counts | 187 | (YST) placed in vineyards and sampled for molecular analyses. Counts | ||
188 | may differ if the quality of the individual specimens was deemed as | 188 | may differ if the quality of the individual specimens was deemed as | ||
189 | insufficient for the molecular analysis. Specimens of Scaphoideus | 189 | insufficient for the molecular analysis. Specimens of Scaphoideus | ||
190 | titanus caught in Camorino were sampled but not analyzed.", | 190 | titanus caught in Camorino were sampled but not analyzed.", | ||
191 | "doi": "", | 191 | "doi": "", | ||
192 | "format": ".csv", | 192 | "format": ".csv", | ||
193 | "hash": "", | 193 | "hash": "", | ||
194 | "id": "f43c4bb2-c011-4372-bcf7-93041657bf5a", | 194 | "id": "f43c4bb2-c011-4372-bcf7-93041657bf5a", | ||
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199 | "name": "Leafhopper captures in vineyards.", | 199 | "name": "Leafhopper captures in vineyards.", | ||
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207 | "size": 265, | 207 | "size": 265, | ||
208 | "state": "active", | 208 | "state": "active", | ||
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213 | { | 213 | { | ||
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216 | "created": "2021-04-27T06:04:10.773784", | 216 | "created": "2021-04-27T06:04:10.773784", | ||
217 | "description": "Number of analyzed and 16SrV-infected specimens | 217 | "description": "Number of analyzed and 16SrV-infected specimens | ||
218 | collected on common alder trees and on yellow sticky traps (YST) | 218 | collected on common alder trees and on yellow sticky traps (YST) | ||
219 | placed inside the vineyard and corresponding infection rate.", | 219 | placed inside the vineyard and corresponding infection rate.", | ||
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246 | "description": "Real-time PCR for 16SrV and 16SrXII | 246 | "description": "Real-time PCR for 16SrV and 16SrXII | ||
247 | phytoplasmas, and nested PCR and RFLP digestion (16SrV phytoplasma | 247 | phytoplasmas, and nested PCR and RFLP digestion (16SrV phytoplasma | ||
248 | only). Cq; cycle quantification value; BDL: below detection limit; | 248 | only). Cq; cycle quantification value; BDL: below detection limit; | ||
249 | FDp: \u201cFlavescence dor\u00e9e\u201d phytoplasma; BNp: \u201cBois | 249 | FDp: \u201cFlavescence dor\u00e9e\u201d phytoplasma; BNp: \u201cBois | ||
250 | noir\u201d phytoplasma; +: positive response to real-time PCR test; -: | 250 | noir\u201d phytoplasma; +: positive response to real-time PCR test; -: | ||
251 | negative response to real-time PCR test.", | 251 | negative response to real-time PCR test.", | ||
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261 | sampled symptomatic grapevines in Origlio.", | 261 | sampled symptomatic grapevines in Origlio.", | ||
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278 | "created": "2021-04-27T06:06:05.898747", | 278 | "created": "2021-04-27T06:06:05.898747", | ||
279 | "description": "Number of sampling common alder trees (NAlders) | 279 | "description": "Number of sampling common alder trees (NAlders) | ||
280 | and data regarding captures of O. ishidae (mean, standard deviation | 280 | and data regarding captures of O. ishidae (mean, standard deviation | ||
281 | (SD), number of observations (NObservations) and total seasonal | 281 | (SD), number of observations (NObservations) and total seasonal | ||
282 | captures) are reported.", | 282 | captures) are reported.", | ||
283 | "doi": "", | 283 | "doi": "", | ||
284 | "format": ".csv", | 284 | "format": ".csv", | ||
285 | "hash": "", | 285 | "hash": "", | ||
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291 | "name": "Orientus ishidae (development stages L1-2; L3-5; and | 291 | "name": "Orientus ishidae (development stages L1-2; L3-5; and | ||
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311 | nested PCR and RFLP digestion (Origlio only). Cq; cycle quantification | 311 | nested PCR and RFLP digestion (Origlio only). Cq; cycle quantification | ||
312 | value; +: positive response to real-time PCR test; -: negative | 312 | value; +: positive response to real-time PCR test; -: negative | ||
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323 | sampled common alder trees in Origlio, Camorino, and Montalbano.", | 323 | sampled common alder trees in Origlio, Camorino, and Montalbano.", | ||
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337 | ], | 337 | ], | ||
338 | "spatial": | 338 | "spatial": | ||
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340 | "spatial_info": "Southern Switzerland", | 340 | "spatial_info": "Southern Switzerland", | ||
341 | "state": "active", | 341 | "state": "active", | ||
342 | "subtitle": "", | 342 | "subtitle": "", | ||
343 | "tags": [ | 343 | "tags": [ | ||
344 | { | 344 | { | ||
345 | "display_name": "16SRV", | 345 | "display_name": "16SRV", | ||
346 | "id": "d521125d-3cbf-4c12-81df-06a300af4fac", | 346 | "id": "d521125d-3cbf-4c12-81df-06a300af4fac", | ||
347 | "name": "16SRV", | 347 | "name": "16SRV", | ||
348 | "state": "active", | 348 | "state": "active", | ||
349 | "vocabulary_id": null | 349 | "vocabulary_id": null | ||
350 | }, | 350 | }, | ||
351 | { | 351 | { | ||
352 | "display_name": "ALNUS GLUTINOSA", | 352 | "display_name": "ALNUS GLUTINOSA", | ||
353 | "id": "36da643c-756f-4bc5-aa1e-357539a866cf", | 353 | "id": "36da643c-756f-4bc5-aa1e-357539a866cf", | ||
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360 | "id": "65e4d097-7119-404f-8b65-352d5fa0d1b4", | 360 | "id": "65e4d097-7119-404f-8b65-352d5fa0d1b4", | ||
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363 | "vocabulary_id": null | 363 | "vocabulary_id": null | ||
364 | }, | 364 | }, | ||
365 | { | 365 | { | ||
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367 | "id": "c6cf9604-8326-41a4-9667-30d9c6429b10", | 367 | "id": "c6cf9604-8326-41a4-9667-30d9c6429b10", | ||
368 | "name": "FLAVESCENCE DOR\u00c9E", | 368 | "name": "FLAVESCENCE DOR\u00c9E", | ||
369 | "state": "active", | 369 | "state": "active", | ||
370 | "vocabulary_id": null | 370 | "vocabulary_id": null | ||
371 | }, | 371 | }, | ||
372 | { | 372 | { | ||
373 | "display_name": "MAP GENOTYPE", | 373 | "display_name": "MAP GENOTYPE", | ||
374 | "id": "f9687ea3-e6d2-492e-ab0d-bf7e2cf61230", | 374 | "id": "f9687ea3-e6d2-492e-ab0d-bf7e2cf61230", | ||
375 | "name": "MAP GENOTYPE", | 375 | "name": "MAP GENOTYPE", | ||
376 | "state": "active", | 376 | "state": "active", | ||
377 | "vocabulary_id": null | 377 | "vocabulary_id": null | ||
378 | }, | 378 | }, | ||
379 | { | 379 | { | ||
380 | "display_name": "ORIENTUS ISHIDAE", | 380 | "display_name": "ORIENTUS ISHIDAE", | ||
381 | "id": "2dd4b3c8-6d19-4744-bd22-741a0e907bb6", | 381 | "id": "2dd4b3c8-6d19-4744-bd22-741a0e907bb6", | ||
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383 | "state": "active", | 383 | "state": "active", | ||
384 | "vocabulary_id": null | 384 | "vocabulary_id": null | ||
385 | }, | 385 | }, | ||
386 | { | 386 | { | ||
387 | "display_name": "PHYTOPLASMA", | 387 | "display_name": "PHYTOPLASMA", | ||
388 | "id": "5647ceaf-e518-438d-9b41-9faaa7d162e0", | 388 | "id": "5647ceaf-e518-438d-9b41-9faaa7d162e0", | ||
389 | "name": "PHYTOPLASMA", | 389 | "name": "PHYTOPLASMA", | ||
390 | "state": "active", | 390 | "state": "active", | ||
391 | "vocabulary_id": null | 391 | "vocabulary_id": null | ||
392 | }, | 392 | }, | ||
393 | { | 393 | { | ||
394 | "display_name": "SCAPHOIDEUS TITANUS", | 394 | "display_name": "SCAPHOIDEUS TITANUS", | ||
395 | "id": "b89aac3b-5b92-49f5-ab06-32bca55f90e9", | 395 | "id": "b89aac3b-5b92-49f5-ab06-32bca55f90e9", | ||
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398 | "vocabulary_id": null | 398 | "vocabulary_id": null | ||
399 | }, | 399 | }, | ||
400 | { | 400 | { | ||
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403 | "name": "SWITZERLAND", | 403 | "name": "SWITZERLAND", | ||
404 | "state": "active", | 404 | "state": "active", | ||
405 | "vocabulary_id": null | 405 | "vocabulary_id": null | ||
406 | }, | 406 | }, | ||
407 | { | 407 | { | ||
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409 | "id": "4792341c-a397-4f26-883b-ee8f10d35456", | 409 | "id": "4792341c-a397-4f26-883b-ee8f10d35456", | ||
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412 | "vocabulary_id": null | 412 | "vocabulary_id": null | ||
413 | } | 413 | } | ||
414 | ], | 414 | ], | ||
415 | "title": "Alnus glutinosa (L.) Gaertn. and Orientus ishidae | 415 | "title": "Alnus glutinosa (L.) Gaertn. and Orientus ishidae | ||
416 | (Matsumura, 1902) share phytoplasma genotypes linked to the | 416 | (Matsumura, 1902) share phytoplasma genotypes linked to the | ||
417 | \u201cFlavescence dor\u00e9e\u201d epidemics", | 417 | \u201cFlavescence dor\u00e9e\u201d epidemics", | ||
418 | "type": "dataset", | 418 | "type": "dataset", | ||
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420 | "version": "1.0" | 420 | "version": "1.0" | ||
421 | } | 421 | } |