Changes
On September 15, 2021 at 12:06:02 PM UTC, Alexander Skeels:
-
Added resource Dataset S5 to Data from: Earth history events shaped the evolution of uneven biodiversity across tropical moist forests
f | 1 | { | f | 1 | { |
2 | "author": "[{\"affiliation\": \"German Centre for Integrative | 2 | "author": "[{\"affiliation\": \"German Centre for Integrative | ||
3 | Biodiversity Research Halle\\u2013Jena\\u2013Leipzig\", | 3 | Biodiversity Research Halle\\u2013Jena\\u2013Leipzig\", | ||
4 | \"affiliation_02\": \"ETH Zurich\", \"affiliation_03\": \"\", | 4 | \"affiliation_02\": \"ETH Zurich\", \"affiliation_03\": \"\", | ||
5 | \"data_credit\": [\"collection\", \"validation\", \"curation\", | 5 | \"data_credit\": [\"collection\", \"validation\", \"curation\", | ||
6 | \"software\", \"publication\"], \"email\": \"oskar@hagen.bio\", | 6 | \"software\", \"publication\"], \"email\": \"oskar@hagen.bio\", | ||
7 | \"given_name\": \"Oskar\", \"identifier\": \"0000-0002-7931-6571\", | 7 | \"given_name\": \"Oskar\", \"identifier\": \"0000-0002-7931-6571\", | ||
8 | \"name\": \"Hagen\"}, {\"affiliation\": \"Swiss Federal Research | 8 | \"name\": \"Hagen\"}, {\"affiliation\": \"Swiss Federal Research | ||
9 | Institute for Forest, Snow and Landscape (WSL)\", \"affiliation_02\": | 9 | Institute for Forest, Snow and Landscape (WSL)\", \"affiliation_02\": | ||
10 | \"ETH Zurich\", \"affiliation_03\": \"\", \"data_credit\": | 10 | \"ETH Zurich\", \"affiliation_03\": \"\", \"data_credit\": | ||
11 | [\"collection\", \"validation\", \"curation\", \"software\", | 11 | [\"collection\", \"validation\", \"curation\", \"software\", | ||
12 | \"publication\"], \"email\": \"alexander.skeels@usys.ethz.ch\", | 12 | \"publication\"], \"email\": \"alexander.skeels@usys.ethz.ch\", | ||
13 | \"given_name\": \"Alexander\", \"identifier\": \"\", \"name\": | 13 | \"given_name\": \"Alexander\", \"identifier\": \"\", \"name\": | ||
14 | \"Skeels\"}, {\"affiliation\": \"German Centre for Integrative | 14 | \"Skeels\"}, {\"affiliation\": \"German Centre for Integrative | ||
15 | Biodiversity Research Halle\\u2013Jena\\u2013Leipzig\", | 15 | Biodiversity Research Halle\\u2013Jena\\u2013Leipzig\", | ||
16 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | 16 | \"affiliation_02\": \"\", \"affiliation_03\": \"\", \"data_credit\": | ||
17 | [\"collection\", \"publication\"], \"email\": | 17 | [\"collection\", \"publication\"], \"email\": | ||
18 | \"renske.onstein@idiv.de\", \"given_name\": \"Renske\", | 18 | \"renske.onstein@idiv.de\", \"given_name\": \"Renske\", | ||
19 | \"identifier\": \"0000-0002-2295-3510\", \"name\": \"Onstein\"}, | 19 | \"identifier\": \"0000-0002-2295-3510\", \"name\": \"Onstein\"}, | ||
20 | {\"affiliation\": \"Department of Ecology and Evolutionary Biology, | 20 | {\"affiliation\": \"Department of Ecology and Evolutionary Biology, | ||
21 | Yale University\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | 21 | Yale University\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | ||
22 | \"data_credit\": [\"collection\", \"validation\", \"publication\"], | 22 | \"data_credit\": [\"collection\", \"validation\", \"publication\"], | ||
23 | \"email\": \"walter.jetz@yale.edu\", \"given_name\": \"Walter\", | 23 | \"email\": \"walter.jetz@yale.edu\", \"given_name\": \"Walter\", | ||
24 | \"identifier\": \"0000-0002-1971-7277\", \"name\": \"Jetz\"}, | 24 | \"identifier\": \"0000-0002-1971-7277\", \"name\": \"Jetz\"}, | ||
25 | {\"affiliation\": \"ETH Zurich\", \"affiliation_02\": \"Swiss Federal | 25 | {\"affiliation\": \"ETH Zurich\", \"affiliation_02\": \"Swiss Federal | ||
26 | Research Institute for Forest, Snow and Landscape (WSL)\", | 26 | Research Institute for Forest, Snow and Landscape (WSL)\", | ||
27 | \"affiliation_03\": \"\", \"data_credit\": [\"collection\", | 27 | \"affiliation_03\": \"\", \"data_credit\": [\"collection\", | ||
28 | \"validation\", \"curation\", \"software\", \"publication\", | 28 | \"validation\", \"curation\", \"software\", \"publication\", | ||
29 | \"supervision\"], \"email\": \"loic.pellissier@usys.ethz.ch\", | 29 | \"supervision\"], \"email\": \"loic.pellissier@usys.ethz.ch\", | ||
30 | \"given_name\": \"Loic\", \"identifier\": \"\", \"name\": | 30 | \"given_name\": \"Loic\", \"identifier\": \"\", \"name\": | ||
31 | \"Pellissier\"}]", | 31 | \"Pellissier\"}]", | ||
32 | "author_email": null, | 32 | "author_email": null, | ||
33 | "creator_user_id": "93fd6aa4-4bae-4c26-9561-c54eb9142d42", | 33 | "creator_user_id": "93fd6aa4-4bae-4c26-9561-c54eb9142d42", | ||
34 | "date": "[{\"date\": \"2020-04-15\", \"date_type\": \"collected\", | 34 | "date": "[{\"date\": \"2020-04-15\", \"date_type\": \"collected\", | ||
35 | \"end_date\": \"2021-09-15\"}]", | 35 | \"end_date\": \"2021-09-15\"}]", | ||
36 | "doi": "", | 36 | "doi": "", | ||
37 | "funding": "[{\"grant_number\": \"310030-188550\", \"institution\": | 37 | "funding": "[{\"grant_number\": \"310030-188550\", \"institution\": | ||
38 | \"Schweizerischer Nationalfonds zur F\u00f6rderung der | 38 | \"Schweizerischer Nationalfonds zur F\u00f6rderung der | ||
39 | Wissenschaftlichen Forschung\", \"institution_url\": \"\"}]", | 39 | Wissenschaftlichen Forschung\", \"institution_url\": \"\"}]", | ||
40 | "groups": [], | 40 | "groups": [], | ||
41 | "id": "b7783edd-a5bc-4854-8e7d-1698afc875b9", | 41 | "id": "b7783edd-a5bc-4854-8e7d-1698afc875b9", | ||
42 | "isopen": false, | 42 | "isopen": false, | ||
43 | "language": "en", | 43 | "language": "en", | ||
44 | "license_id": "wsl-data", | 44 | "license_id": "wsl-data", | ||
45 | "license_title": "WSL Data Policy", | 45 | "license_title": "WSL Data Policy", | ||
46 | "license_url": | 46 | "license_url": | ||
47 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | 47 | ps://www.wsl.ch/en/about-wsl/programmes-and-initiatives/envidat.html", | ||
48 | "maintainer": "{\"affiliation\": \"WSL / ETH\", \"email\": | 48 | "maintainer": "{\"affiliation\": \"WSL / ETH\", \"email\": | ||
49 | \"loic.pellissier@usys.ethz.ch\", \"given_name\": \"Loic\", | 49 | \"loic.pellissier@usys.ethz.ch\", \"given_name\": \"Loic\", | ||
50 | \"identifier\": \"\", \"name\": \"Pellissier\"}", | 50 | \"identifier\": \"\", \"name\": \"Pellissier\"}", | ||
51 | "maintainer_email": null, | 51 | "maintainer_email": null, | ||
52 | "metadata_created": "2021-09-15T11:44:16.660831", | 52 | "metadata_created": "2021-09-15T11:44:16.660831", | ||
n | 53 | "metadata_modified": "2021-09-15T12:05:33.354276", | n | 53 | "metadata_modified": "2021-09-15T12:06:02.340328", |
54 | "name": "data-from-hagen_skeels_etal_2021_pnas", | 54 | "name": "data-from-hagen_skeels_etal_2021_pnas", | ||
55 | "notes": "Datasets and R scripts | 55 | "notes": "Datasets and R scripts | ||
56 | \r\n\r\n~~~~~Datasets\r\n\r\nDataset_S1.csv includes species diversity | 56 | \r\n\r\n~~~~~Datasets\r\n\r\nDataset_S1.csv includes species diversity | ||
57 | counts for 237 clades in tropical moist forests (TMF) in the | 57 | counts for 237 clades in tropical moist forests (TMF) in the | ||
58 | Neotropics (NeotropicalTMF), Indomalaya (IndomalayanTMF), Afrotropics | 58 | Neotropics (NeotropicalTMF), Indomalaya (IndomalayanTMF), Afrotropics | ||
59 | (AfrotropicalTMF), All three TMF regions together (AllTMF), all | 59 | (AfrotropicalTMF), All three TMF regions together (AllTMF), all | ||
60 | non-TMF regions (NonTMF), and in total (Total). As well as whether the | 60 | non-TMF regions (NonTMF), and in total (Total). As well as whether the | ||
61 | clade is pantropical (Pantropical_clade) and shows the pantropical | 61 | clade is pantropical (Pantropical_clade) and shows the pantropical | ||
62 | diversity disparity (PDD_clade). \r\n\r\nDataset_S2.csv: environmental | 62 | diversity disparity (PDD_clade). \r\n\r\nDataset_S2.csv: environmental | ||
63 | and species richness data. Longitude (x), latitude (y), potential | 63 | and species richness data. Longitude (x), latitude (y), potential | ||
64 | evapotranspiration (PET), mean annual temperature (MAT), mean annual | 64 | evapotranspiration (PET), mean annual temperature (MAT), mean annual | ||
65 | precipitation), amphibian, bird, mammal, and reptile species richness, | 65 | precipitation), amphibian, bird, mammal, and reptile species richness, | ||
66 | PC1 and PC2 of environmental PCA and the region. Environmental data | 66 | PC1 and PC2 of environmental PCA and the region. Environmental data | ||
67 | (from CHELSA and ENVIREM) and species richness summarised from | 67 | (from CHELSA and ENVIREM) and species richness summarised from | ||
68 | published data (vertLife, MOL, IUCN, GARD).\r\n\r\nDataset_S3.csv: - | 68 | published data (vertLife, MOL, IUCN, GARD).\r\n\r\nDataset_S3.csv: - | ||
69 | Paleoenvironmental reconstructions (details in the associated SI | 69 | Paleoenvironmental reconstructions (details in the associated SI | ||
70 | appendix) including latitude (y), longitude (x), and temperature data | 70 | appendix) including latitude (y), longitude (x), and temperature data | ||
71 | across 200 myrs at 170 kyr intervals.\r\n\r\nDataset_S4.csv: | 71 | across 200 myrs at 170 kyr intervals.\r\n\r\nDataset_S4.csv: | ||
72 | simulation model parameters and diversity summary statistics. | 72 | simulation model parameters and diversity summary statistics. | ||
73 | Including rate of temperature niche evolution (Tev), temperature niche | 73 | Including rate of temperature niche evolution (Tev), temperature niche | ||
74 | width (TW), divergence threshold (S), Dispersal probability | 74 | width (TW), divergence threshold (S), Dispersal probability | ||
75 | distribution shape (WeibullShape) and information on number of extinct | 75 | distribution shape (WeibullShape) and information on number of extinct | ||
76 | species, number of extant species, total species, Spearman correlation | 76 | species, number of extant species, total species, Spearman correlation | ||
77 | coefficient between absolute latitude and species richness | 77 | coefficient between absolute latitude and species richness | ||
78 | (latitude_richness_cor), and diversity in the Neotropics, Indomalaya, | 78 | (latitude_richness_cor), and diversity in the Neotropics, Indomalaya, | ||
79 | Afrotropics. Also, whether the simulation generated pantropical | 79 | Afrotropics. Also, whether the simulation generated pantropical | ||
80 | distribution of species (pantropicality_index), or the pantropical | 80 | distribution of species (pantropicality_index), or the pantropical | ||
81 | diversity disparity (PDD_index). Finally what time step the simulation | 81 | diversity disparity (PDD_index). Finally what time step the simulation | ||
82 | exited at (0 for complete simulations).\r\n\r\nDataset_S5.csv: Net | 82 | exited at (0 for complete simulations).\r\n\r\nDataset_S5.csv: Net | ||
83 | relatedness index (NRI) in three tropical moist forest regions and | 83 | relatedness index (NRI) in three tropical moist forest regions and | ||
84 | associated p-values for pantropically distributed | 84 | associated p-values for pantropically distributed | ||
85 | taxa.\r\n\r\n~~~~~Scripts\r\n\r\nGen3sis_config_creator.R and | 85 | taxa.\r\n\r\n~~~~~Scripts\r\n\r\nGen3sis_config_creator.R and | ||
86 | Gen3sis_config_template.R scripts generate the configurations files to | 86 | Gen3sis_config_template.R scripts generate the configurations files to | ||
87 | run the simulation experiment.\r\n\r\nGLS.R R script to replicate the | 87 | run the simulation experiment.\r\n\r\nGLS.R R script to replicate the | ||
88 | linear modelling analyses.\r\n\r\n", | 88 | linear modelling analyses.\r\n\r\n", | ||
n | 89 | "num_resources": 8, | n | 89 | "num_resources": 9, |
90 | "num_tags": 5, | 90 | "num_tags": 5, | ||
91 | "organization": { | 91 | "organization": { | ||
92 | "approval_status": "approved", | 92 | "approval_status": "approved", | ||
93 | "created": "2018-12-01T11:42:44.590217", | 93 | "created": "2018-12-01T11:42:44.590217", | ||
94 | "description": "Our laboratory aims at understanding and | 94 | "description": "Our laboratory aims at understanding and | ||
95 | forecasting the response of biodiversity to landscape changes. We | 95 | forecasting the response of biodiversity to landscape changes. We | ||
96 | investigate the historical responses of species to past changes such | 96 | investigate the historical responses of species to past changes such | ||
97 | as plate tectonics or the glaciations of the Quaternary and | 97 | as plate tectonics or the glaciations of the Quaternary and | ||
98 | contemporary responses to ongoing global changes. We develop spatial | 98 | contemporary responses to ongoing global changes. We develop spatial | ||
99 | mechanistic models of biodiversity that account for processes such as | 99 | mechanistic models of biodiversity that account for processes such as | ||
100 | dispersal and biotic interactions.", | 100 | dispersal and biotic interactions.", | ||
101 | "id": "3b0fde83-e15c-4f8b-a451-9778f5309a84", | 101 | "id": "3b0fde83-e15c-4f8b-a451-9778f5309a84", | ||
102 | "image_url": | 102 | "image_url": | ||
103 | ww.ites.ethz.ch/_jcr_content/orgLogo.imageformat.logo.1518520524.jpg", | 103 | ww.ites.ethz.ch/_jcr_content/orgLogo.imageformat.logo.1518520524.jpg", | ||
104 | "is_organization": true, | 104 | "is_organization": true, | ||
105 | "name": "landscape-ecology", | 105 | "name": "landscape-ecology", | ||
106 | "state": "active", | 106 | "state": "active", | ||
107 | "title": "Landscape Ecology", | 107 | "title": "Landscape Ecology", | ||
108 | "type": "organization" | 108 | "type": "organization" | ||
109 | }, | 109 | }, | ||
110 | "owner_org": "3b0fde83-e15c-4f8b-a451-9778f5309a84", | 110 | "owner_org": "3b0fde83-e15c-4f8b-a451-9778f5309a84", | ||
111 | "private": false, | 111 | "private": false, | ||
112 | "publication": "{\"publication_year\": \"2021\", \"publisher\": | 112 | "publication": "{\"publication_year\": \"2021\", \"publisher\": | ||
113 | \"EnviDat\"}", | 113 | \"EnviDat\"}", | ||
114 | "publication_state": "", | 114 | "publication_state": "", | ||
115 | "related_datasets": "", | 115 | "related_datasets": "", | ||
116 | "related_publications": "", | 116 | "related_publications": "", | ||
117 | "relationships_as_object": [], | 117 | "relationships_as_object": [], | ||
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119 | "resource_type": "dataset", | 119 | "resource_type": "dataset", | ||
120 | "resource_type_general": "dataset", | 120 | "resource_type_general": "dataset", | ||
121 | "resources": [ | 121 | "resources": [ | ||
122 | { | 122 | { | ||
123 | "cache_last_updated": null, | 123 | "cache_last_updated": null, | ||
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125 | "created": "2021-09-15T11:51:54.396594", | 125 | "created": "2021-09-15T11:51:54.396594", | ||
126 | "description": "Dataset_S1.csv includes species diversity counts | 126 | "description": "Dataset_S1.csv includes species diversity counts | ||
127 | for 237 clades in tropical moist forests (TMF) in the Neotropics | 127 | for 237 clades in tropical moist forests (TMF) in the Neotropics | ||
128 | (NeotropicalTMF), Indomalaya (IndomalayanTMF), Afrotropics | 128 | (NeotropicalTMF), Indomalaya (IndomalayanTMF), Afrotropics | ||
129 | (AfrotropicalTMF), All three TMF regions together (AllTMF), all | 129 | (AfrotropicalTMF), All three TMF regions together (AllTMF), all | ||
130 | non-TMF regions (NonTMF), and in total (Total). As well as whether the | 130 | non-TMF regions (NonTMF), and in total (Total). As well as whether the | ||
131 | clade is pantropical (Pantropical_clade) and shows the pantropical | 131 | clade is pantropical (Pantropical_clade) and shows the pantropical | ||
132 | diversity disparity (PDD_clade). ", | 132 | diversity disparity (PDD_clade). ", | ||
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141 | "name": "Dataset S1", | 141 | "name": "Dataset S1", | ||
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161 | Gen3sis_config_template.R scripts generate the configurations files to | 161 | Gen3sis_config_template.R scripts generate the configurations files to | ||
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190 | "description": "Gen3sis_config_creator.R and | 190 | "description": "Gen3sis_config_creator.R and | ||
191 | Gen3sis_config_template.R scripts generate the configurations files to | 191 | Gen3sis_config_template.R scripts generate the configurations files to | ||
192 | run the simulation experiment.", | 192 | run the simulation experiment.", | ||
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244 | }, | 244 | }, | ||
245 | { | 245 | { | ||
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248 | "created": "2021-09-15T11:48:21.670609", | 248 | "created": "2021-09-15T11:48:21.670609", | ||
249 | "description": "Zip folder containing:\r\n\r\nDataset_S1.csv: | 249 | "description": "Zip folder containing:\r\n\r\nDataset_S1.csv: | ||
250 | includes species diversity counts for 237 clades in tropical moist | 250 | includes species diversity counts for 237 clades in tropical moist | ||
251 | forests (TMF) in the Neotropics (NeotropicalTMF), Indomalaya | 251 | forests (TMF) in the Neotropics (NeotropicalTMF), Indomalaya | ||
252 | (IndomalayanTMF), Afrotropics (AfrotropicalTMF), All three TMF regions | 252 | (IndomalayanTMF), Afrotropics (AfrotropicalTMF), All three TMF regions | ||
253 | together (AllTMF), all non-TMF regions (NonTMF), and in total (Total). | 253 | together (AllTMF), all non-TMF regions (NonTMF), and in total (Total). | ||
254 | As well as whether the clade is pantropical (Pantropical_clade) and | 254 | As well as whether the clade is pantropical (Pantropical_clade) and | ||
255 | shows the pantropical diversity disparity (PDD_clade). | 255 | shows the pantropical diversity disparity (PDD_clade). | ||
256 | \r\nDataset_S2.csv: environmental and species richness data. Longitude | 256 | \r\nDataset_S2.csv: environmental and species richness data. Longitude | ||
257 | (x), latitude (y), potential evapotranspiration (PET), mean annual | 257 | (x), latitude (y), potential evapotranspiration (PET), mean annual | ||
258 | temperature (MAT), mean annual precipitation), amphibian, bird, | 258 | temperature (MAT), mean annual precipitation), amphibian, bird, | ||
259 | mammal, and reptile species richness, PC1 and PC2 of environmental PCA | 259 | mammal, and reptile species richness, PC1 and PC2 of environmental PCA | ||
260 | and the region. Environmental data (from CHELSA and ENVIREM) and | 260 | and the region. Environmental data (from CHELSA and ENVIREM) and | ||
261 | species richness summarised from published data (vertLife, MOL, IUCN, | 261 | species richness summarised from published data (vertLife, MOL, IUCN, | ||
262 | GARD).\r\nDataset_S3.csv: - Paleoenvironmental reconstructions | 262 | GARD).\r\nDataset_S3.csv: - Paleoenvironmental reconstructions | ||
263 | (details in the associated SI appendix) including latitude (y), | 263 | (details in the associated SI appendix) including latitude (y), | ||
264 | longitude (x), and temperature data across 200 myrs at 170 kyr | 264 | longitude (x), and temperature data across 200 myrs at 170 kyr | ||
265 | intervals.\r\nDataset_S4.csv: simulation model parameters and | 265 | intervals.\r\nDataset_S4.csv: simulation model parameters and | ||
266 | diversity summary statistics. Including rate of temperature niche | 266 | diversity summary statistics. Including rate of temperature niche | ||
267 | evolution (Tev), temperature niche width (TW), divergence threshold | 267 | evolution (Tev), temperature niche width (TW), divergence threshold | ||
268 | (S), Dispersal probability distribution shape (WeibullShape) and | 268 | (S), Dispersal probability distribution shape (WeibullShape) and | ||
269 | information on number of extinct species, number of extant species, | 269 | information on number of extinct species, number of extant species, | ||
270 | total species, Spearman correlation coefficient between absolute | 270 | total species, Spearman correlation coefficient between absolute | ||
271 | latitude and species richness (latitude_richness_cor), and diversity | 271 | latitude and species richness (latitude_richness_cor), and diversity | ||
272 | in the Neotropics, Indomalaya, Afrotropics. Also, whether the | 272 | in the Neotropics, Indomalaya, Afrotropics. Also, whether the | ||
273 | simulation generated pantropical distribution of species | 273 | simulation generated pantropical distribution of species | ||
274 | (pantropicality_index), or the pantropical diversity disparity | 274 | (pantropicality_index), or the pantropical diversity disparity | ||
275 | (PDD_index). Finally what time step the simulation exited at (0 for | 275 | (PDD_index). Finally what time step the simulation exited at (0 for | ||
276 | complete simulations).\r\nDataset_S5.csv: Net relatedness index (NRI) | 276 | complete simulations).\r\nDataset_S5.csv: Net relatedness index (NRI) | ||
277 | in three tropical moist forest regions and associated p-values for | 277 | in three tropical moist forest regions and associated p-values for | ||
278 | pantropically distributed taxa.\r\nGen3sis_config_creator.R and | 278 | pantropically distributed taxa.\r\nGen3sis_config_creator.R and | ||
279 | Gen3sis_config_template.R scripts generate the configurations files to | 279 | Gen3sis_config_template.R scripts generate the configurations files to | ||
280 | run the simulation experiment.\r\nGLS.R R script to replicate the | 280 | run the simulation experiment.\r\nGLS.R R script to replicate the | ||
281 | linear modelling analyses.\r\n", | 281 | linear modelling analyses.\r\n", | ||
282 | "doi": "", | 282 | "doi": "", | ||
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310 | richness data. Longitude (x), latitude (y), potential | 310 | richness data. Longitude (x), latitude (y), potential | ||
311 | evapotranspiration (PET), mean annual temperature (MAT), mean annual | 311 | evapotranspiration (PET), mean annual temperature (MAT), mean annual | ||
312 | precipitation), amphibian, bird, mammal, and reptile species richness, | 312 | precipitation), amphibian, bird, mammal, and reptile species richness, | ||
313 | PC1 and PC2 of environmental PCA and the region. Environmental data | 313 | PC1 and PC2 of environmental PCA and the region. Environmental data | ||
314 | (from CHELSA and ENVIREM) and species richness summarised from | 314 | (from CHELSA and ENVIREM) and species richness summarised from | ||
315 | published data (vertLife, MOL, IUCN, GARD).", | 315 | published data (vertLife, MOL, IUCN, GARD).", | ||
316 | "doi": "", | 316 | "doi": "", | ||
317 | "format": ".csv", | 317 | "format": ".csv", | ||
318 | "hash": "", | 318 | "hash": "", | ||
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342 | "created": "2021-09-15T12:05:05.340288", | 342 | "created": "2021-09-15T12:05:05.340288", | ||
343 | "description": "Dataset_S3.csv: - Paleoenvironmental | 343 | "description": "Dataset_S3.csv: - Paleoenvironmental | ||
344 | reconstructions (details in the associated SI appendix) including | 344 | reconstructions (details in the associated SI appendix) including | ||
345 | latitude (y), longitude (x), and temperature data across 200 myrs at | 345 | latitude (y), longitude (x), and temperature data across 200 myrs at | ||
346 | 170 kyr intervals.", | 346 | 170 kyr intervals.", | ||
347 | "doi": "", | 347 | "doi": "", | ||
348 | "format": ".csv", | 348 | "format": ".csv", | ||
349 | "hash": "", | 349 | "hash": "", | ||
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373 | "created": "2021-09-15T12:05:33.383648", | 373 | "created": "2021-09-15T12:05:33.383648", | ||
374 | "description": "Dataset_S4.csv: simulation model parameters and | 374 | "description": "Dataset_S4.csv: simulation model parameters and | ||
375 | diversity summary statistics. Including rate of temperature niche | 375 | diversity summary statistics. Including rate of temperature niche | ||
376 | evolution (Tev), temperature niche width (TW), divergence threshold | 376 | evolution (Tev), temperature niche width (TW), divergence threshold | ||
377 | (S), Dispersal probability distribution shape (WeibullShape) and | 377 | (S), Dispersal probability distribution shape (WeibullShape) and | ||
378 | information on number of extinct species, number of extant species, | 378 | information on number of extinct species, number of extant species, | ||
379 | total species, Spearman correlation coefficient between absolute | 379 | total species, Spearman correlation coefficient between absolute | ||
380 | latitude and species richness (latitude_richness_cor), and diversity | 380 | latitude and species richness (latitude_richness_cor), and diversity | ||
381 | in the Neotropics, Indomalaya, Afrotropics. Also, whether the | 381 | in the Neotropics, Indomalaya, Afrotropics. Also, whether the | ||
382 | simulation generated pantropical distribution of species | 382 | simulation generated pantropical distribution of species | ||
383 | (pantropicality_index), or the pantropical diversity disparity | 383 | (pantropicality_index), or the pantropical diversity disparity | ||
384 | (PDD_index). Finally what time step the simulation exited at (0 for | 384 | (PDD_index). Finally what time step the simulation exited at (0 for | ||
385 | complete simulations).", | 385 | complete simulations).", | ||
386 | "doi": "", | 386 | "doi": "", | ||
387 | "format": ".csv", | 387 | "format": ".csv", | ||
388 | "hash": "", | 388 | "hash": "", | ||
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414 | three tropical moist forest regions and associated p-values for | ||||
415 | pantropically distributed taxa.", | ||||
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408 | } | 438 | } | ||
409 | ], | 439 | ], | ||
410 | "spatial": "{\"type\": \"Polygon\", \"coordinates\": [[[5.95587, | 440 | "spatial": "{\"type\": \"Polygon\", \"coordinates\": [[[5.95587, | ||
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412 | 45.81802],[5.95587, 45.81802]]]}", | 442 | 45.81802],[5.95587, 45.81802]]]}", | ||
413 | "spatial_info": "Switzerland", | 443 | "spatial_info": "Switzerland", | ||
414 | "state": "active", | 444 | "state": "active", | ||
415 | "subtitle": "", | 445 | "subtitle": "", | ||
416 | "tags": [ | 446 | "tags": [ | ||
417 | { | 447 | { | ||
418 | "display_name": "GEN3SIS", | 448 | "display_name": "GEN3SIS", | ||
419 | "id": "7fd8733b-4feb-438b-a363-65cb5ce4b52a", | 449 | "id": "7fd8733b-4feb-438b-a363-65cb5ce4b52a", | ||
420 | "name": "GEN3SIS", | 450 | "name": "GEN3SIS", | ||
421 | "state": "active", | 451 | "state": "active", | ||
422 | "vocabulary_id": null | 452 | "vocabulary_id": null | ||
423 | }, | 453 | }, | ||
424 | { | 454 | { | ||
425 | "display_name": "MECHANISTIC MODELING", | 455 | "display_name": "MECHANISTIC MODELING", | ||
426 | "id": "64a80515-5864-4aee-9311-9fa9b13b8b5c", | 456 | "id": "64a80515-5864-4aee-9311-9fa9b13b8b5c", | ||
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428 | "state": "active", | 458 | "state": "active", | ||
429 | "vocabulary_id": null | 459 | "vocabulary_id": null | ||
430 | }, | 460 | }, | ||
431 | { | 461 | { | ||
432 | "display_name": "PALEOCLIMATE", | 462 | "display_name": "PALEOCLIMATE", | ||
433 | "id": "5b2c5931-065b-49a9-89a4-b082eaf78e0e", | 463 | "id": "5b2c5931-065b-49a9-89a4-b082eaf78e0e", | ||
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436 | "vocabulary_id": null | 466 | "vocabulary_id": null | ||
437 | }, | 467 | }, | ||
438 | { | 468 | { | ||
439 | "display_name": "PANTROPICAL DIVERSITY DISPARITY", | 469 | "display_name": "PANTROPICAL DIVERSITY DISPARITY", | ||
440 | "id": "c1a2995c-32b5-4bb6-9de7-e1f29e697791", | 470 | "id": "c1a2995c-32b5-4bb6-9de7-e1f29e697791", | ||
441 | "name": "PANTROPICAL DIVERSITY DISPARITY", | 471 | "name": "PANTROPICAL DIVERSITY DISPARITY", | ||
442 | "state": "active", | 472 | "state": "active", | ||
443 | "vocabulary_id": null | 473 | "vocabulary_id": null | ||
444 | }, | 474 | }, | ||
445 | { | 475 | { | ||
446 | "display_name": "PLATE TECTONICS", | 476 | "display_name": "PLATE TECTONICS", | ||
447 | "id": "747956ea-3953-4a5e-b63e-0eb7620dea9e", | 477 | "id": "747956ea-3953-4a5e-b63e-0eb7620dea9e", | ||
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450 | "vocabulary_id": null | 480 | "vocabulary_id": null | ||
451 | } | 481 | } | ||
452 | ], | 482 | ], | ||
453 | "title": "Data from: Earth history events shaped the evolution of | 483 | "title": "Data from: Earth history events shaped the evolution of | ||
454 | uneven biodiversity across tropical moist forests", | 484 | uneven biodiversity across tropical moist forests", | ||
455 | "type": "dataset", | 485 | "type": "dataset", | ||
456 | "url": null, | 486 | "url": null, | ||
457 | "version": "1.0" | 487 | "version": "1.0" | ||
458 | } | 488 | } |