Changes
On December 4, 2024 at 1:02:09 PM UTC, Heike Lischke:
-
Updated description of resource TreeMig_Tutorial_v2024_12.pdf in Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics to
Tutorial for using the TreeMig framework; updated
-
Changed value of field
resource_size
of resource TreeMig_Tutorial_v2024_12.pdf to{"size_value":"","size_units":""}
(previously{"size_value":"","size_units":"kb"}
) in Starter Kit for the TreeMig framework v1 for easy simulation of spatio-temporal forest dynamics
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3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | 3 | \"email\": \"heike.lischke@wsl.ch\", \"data_credit\": [\"software\", | ||
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14 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Daniel\", \"name\": | 14 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Daniel\", \"name\": | ||
15 | \"Scherrer\", \"email\": \"daniel.scherrer@wsl.ch\", \"data_credit\": | 15 | \"Scherrer\", \"email\": \"daniel.scherrer@wsl.ch\", \"data_credit\": | ||
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20 | "date": | 20 | "date": | ||
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22 | "doi": "10.16904/envidat.533", | 22 | "doi": "10.16904/envidat.533", | ||
23 | "extras": [ | 23 | "extras": [ | ||
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28 | ], | 28 | ], | ||
29 | "funding": "[{\"institution\":\"WSL internal | 29 | "funding": "[{\"institution\":\"WSL internal | ||
30 | project\",\"grant_number\":\"TreeMig R package and | 30 | project\",\"grant_number\":\"TreeMig R package and | ||
31 | GUI\",\"institution_url\":\"\"},{\"institution\":\"WSL internal | 31 | GUI\",\"institution_url\":\"\"},{\"institution\":\"WSL internal | ||
32 | project\",\"grant_number\":\"WSL Data conversion tool and and | 32 | project\",\"grant_number\":\"WSL Data conversion tool and and | ||
33 | benchmarking data set for spatial forest | 33 | benchmarking data set for spatial forest | ||
34 | models\",\"institution_url\":\"\"}]", | 34 | models\",\"institution_url\":\"\"}]", | ||
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39 | "license_title": "Creative Commons Attribution Share-Alike | 39 | "license_title": "Creative Commons Attribution Share-Alike | ||
40 | (CC-BY-SA)", | 40 | (CC-BY-SA)", | ||
41 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 41 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
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47 | "name": | 47 | "name": | ||
48 | for-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-", | 48 | for-the-treemig-framework-v1-for-easy-simulation-of-spatio-temporal-", | ||
49 | "notes": "Starter kit for the [TreeMig framework](treemig.wsl.ch) | 49 | "notes": "Starter kit for the [TreeMig framework](treemig.wsl.ch) | ||
50 | that allows for an easy application of the forest landscape model | 50 | that allows for an easy application of the forest landscape model | ||
51 | TreeMig for simulating forest dynamics in space under changing | 51 | TreeMig for simulating forest dynamics in space under changing | ||
52 | environmental and land use conditions. \n\nThe starter kit consists of | 52 | environmental and land use conditions. \n\nThe starter kit consists of | ||
53 | a set of climate, land-use, topography and soil property input data | 53 | a set of climate, land-use, topography and soil property input data | ||
54 | for Switzerland, a script for installing the framework and running the | 54 | for Switzerland, a script for installing the framework and running the | ||
55 | GUI of the framework with the link to the input data, a tutorial | 55 | GUI of the framework with the link to the input data, a tutorial | ||
56 | covering a range of simulation examples for Switzerland and a transect | 56 | covering a range of simulation examples for Switzerland and a transect | ||
57 | through Europe, and an associated example simulation environment | 57 | through Europe, and an associated example simulation environment | ||
58 | containing the model executables and other model inputs. ", | 58 | containing the model executables and other model inputs. ", | ||
59 | "num_resources": 4, | 59 | "num_resources": 4, | ||
60 | "num_tags": 11, | 60 | "num_tags": 11, | ||
61 | "organization": { | 61 | "organization": { | ||
62 | "approval_status": "approved", | 62 | "approval_status": "approved", | ||
63 | "created": "2018-05-31T14:24:18.890912", | 63 | "created": "2018-05-31T14:24:18.890912", | ||
64 | "description": "The dynamic macroecology group studies different | 64 | "description": "The dynamic macroecology group studies different | ||
65 | aspects of ecology on large spatial and temporal scales, from the | 65 | aspects of ecology on large spatial and temporal scales, from the | ||
66 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | 66 | Pleistocene to the Anthropocene, related to the question: \u201cHow do | ||
67 | species and their traits change in space and time, particularly with | 67 | species and their traits change in space and time, particularly with | ||
68 | global change?\u201d", | 68 | global change?\u201d", | ||
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70 | "image_url": "", | 70 | "image_url": "", | ||
71 | "is_organization": true, | 71 | "is_organization": true, | ||
72 | "name": "dynamic-macroecology", | 72 | "name": "dynamic-macroecology", | ||
73 | "state": "active", | 73 | "state": "active", | ||
74 | "title": "Dynamic Macroecology", | 74 | "title": "Dynamic Macroecology", | ||
75 | "type": "organization" | 75 | "type": "organization" | ||
76 | }, | 76 | }, | ||
77 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | 77 | "owner_org": "8bdea9a0-ea8c-424f-8c27-a4a1f0c55f02", | ||
78 | "private": false, | 78 | "private": false, | ||
79 | "publication": | 79 | "publication": | ||
80 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | 80 | "{\"publisher\":\"EnviDat\",\"publication_year\":\"2024\"}", | ||
81 | "publication_state": "published", | 81 | "publication_state": "published", | ||
82 | "related_datasets": | 82 | "related_datasets": | ||
83 | factors-slowing-down-upward-shifts-of-trees-upper-elevation-limits\n", | 83 | factors-slowing-down-upward-shifts-of-trees-upper-elevation-limits\n", | ||
84 | "related_publications": | 84 | "related_publications": | ||
85 | %3A23775\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | 85 | %3A23775\nhttps://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A6049", | ||
86 | "relationships_as_object": [], | 86 | "relationships_as_object": [], | ||
87 | "relationships_as_subject": [], | 87 | "relationships_as_subject": [], | ||
88 | "resource_type": "dataset", | 88 | "resource_type": "dataset", | ||
89 | "resource_type_general": "dataset", | 89 | "resource_type_general": "dataset", | ||
90 | "resources": [ | 90 | "resources": [ | ||
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147 | "created": "2024-10-16T08:49:36.787649", | 147 | "created": "2024-10-16T08:49:36.787649", | ||
148 | "description": "The zip file consists of a R-script to provide | 148 | "description": "The zip file consists of a R-script to provide | ||
149 | the framework, an example simulation environment and a set of input | 149 | the framework, an example simulation environment and a set of input | ||
150 | data. \n- The R-script installAndRunTreeMigWrapperAndGUI.R installs | 150 | data. \n- The R-script installAndRunTreeMigWrapperAndGUI.R installs | ||
151 | the R-package, links to the input data and starts the graphical user | 151 | the R-package, links to the input data and starts the graphical user | ||
152 | interface. \n- The gridded input datasets in TMInputData are | 152 | interface. \n- The gridded input datasets in TMInputData are | ||
153 | specifically tailored to Switzerland and have the same coordinate | 153 | specifically tailored to Switzerland and have the same coordinate | ||
154 | reference system and a congruent 200m spatial resolution. They consist | 154 | reference system and a congruent 200m spatial resolution. They consist | ||
155 | of climate, topographic, land use and soil data. For details see | 155 | of climate, topographic, land use and soil data. For details see | ||
156 | TMInputDataDetails.pdf. \n- TMEnvironment is an example simulation | 156 | TMInputDataDetails.pdf. \n- TMEnvironment is an example simulation | ||
157 | environment, i.e. a set of hierarchically structured folders. For the | 157 | environment, i.e. a set of hierarchically structured folders. For the | ||
158 | first example simulation of the tutorial it contains the\n - the | 158 | first example simulation of the tutorial it contains the\n - the | ||
159 | TreeMig executables for MacOS, Linux and Windows\n - simulation | 159 | TreeMig executables for MacOS, Linux and Windows\n - simulation | ||
160 | control files that define the setup and input files of the simulation | 160 | control files that define the setup and input files of the simulation | ||
161 | (in folder C)\n - species parameters (in folder P)\n - bioclimatic | 161 | (in folder C)\n - species parameters (in folder P)\n - bioclimatic | ||
162 | data (in folder E)\n - folder R for results\n - folder Plots for | 162 | data (in folder E)\n - folder R for results\n - folder Plots for | ||
163 | plots of the simulation results.\n - This environment can be also | 163 | plots of the simulation results.\n - This environment can be also | ||
164 | used for the subsequent simulations of the tutorial.\n- Some | 164 | used for the subsequent simulations of the tutorial.\n- Some | ||
165 | additional R-scripts demonstrate more complex applications described | 165 | additional R-scripts demonstrate more complex applications described | ||
166 | in the tutorial, e.g. coupling to another model.\n", | 166 | in the tutorial, e.g. coupling to another model.\n", | ||
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226 | }, | 227 | }, | ||
227 | { | 228 | { | ||
228 | "display_name": "FOREST", | 229 | "display_name": "FOREST", | ||
229 | "id": "90cd0d8f-8df0-4b78-ac11-6e38c2a22106", | 230 | "id": "90cd0d8f-8df0-4b78-ac11-6e38c2a22106", | ||
230 | "name": "FOREST", | 231 | "name": "FOREST", | ||
231 | "state": "active", | 232 | "state": "active", | ||
232 | "vocabulary_id": null | 233 | "vocabulary_id": null | ||
233 | }, | 234 | }, | ||
234 | { | 235 | { | ||
235 | "display_name": "FOREST DYNAMICS", | 236 | "display_name": "FOREST DYNAMICS", | ||
236 | "id": "84957a0d-7cb0-4e32-8633-f8c2e9b2a10f", | 237 | "id": "84957a0d-7cb0-4e32-8633-f8c2e9b2a10f", | ||
237 | "name": "FOREST DYNAMICS", | 238 | "name": "FOREST DYNAMICS", | ||
238 | "state": "active", | 239 | "state": "active", | ||
239 | "vocabulary_id": null | 240 | "vocabulary_id": null | ||
240 | }, | 241 | }, | ||
241 | { | 242 | { | ||
242 | "display_name": "FOREST MODEL", | 243 | "display_name": "FOREST MODEL", | ||
243 | "id": "3beaeb38-eb88-4bbc-91a9-bf62baf2bb6c", | 244 | "id": "3beaeb38-eb88-4bbc-91a9-bf62baf2bb6c", | ||
244 | "name": "FOREST MODEL", | 245 | "name": "FOREST MODEL", | ||
245 | "state": "active", | 246 | "state": "active", | ||
246 | "vocabulary_id": null | 247 | "vocabulary_id": null | ||
247 | }, | 248 | }, | ||
248 | { | 249 | { | ||
249 | "display_name": "GUI", | 250 | "display_name": "GUI", | ||
250 | "id": "9e2db7e6-faea-4dd0-9346-1a7584e84063", | 251 | "id": "9e2db7e6-faea-4dd0-9346-1a7584e84063", | ||
251 | "name": "GUI", | 252 | "name": "GUI", | ||
252 | "state": "active", | 253 | "state": "active", | ||
253 | "vocabulary_id": null | 254 | "vocabulary_id": null | ||
254 | }, | 255 | }, | ||
255 | { | 256 | { | ||
256 | "display_name": "LAND USE", | 257 | "display_name": "LAND USE", | ||
257 | "id": "4fce8a86-0614-4758-863c-9abc3b68b715", | 258 | "id": "4fce8a86-0614-4758-863c-9abc3b68b715", | ||
258 | "name": "LAND USE", | 259 | "name": "LAND USE", | ||
259 | "state": "active", | 260 | "state": "active", | ||
260 | "vocabulary_id": null | 261 | "vocabulary_id": null | ||
261 | }, | 262 | }, | ||
262 | { | 263 | { | ||
263 | "display_name": "R PACKAGE", | 264 | "display_name": "R PACKAGE", | ||
264 | "id": "3ba3a618-38b0-4788-b795-9836b692b3b3", | 265 | "id": "3ba3a618-38b0-4788-b795-9836b692b3b3", | ||
265 | "name": "R PACKAGE", | 266 | "name": "R PACKAGE", | ||
266 | "state": "active", | 267 | "state": "active", | ||
267 | "vocabulary_id": null | 268 | "vocabulary_id": null | ||
268 | }, | 269 | }, | ||
269 | { | 270 | { | ||
270 | "display_name": "SPATIAL MODELLING", | 271 | "display_name": "SPATIAL MODELLING", | ||
271 | "id": "feb98f97-0e99-4f06-85b0-fe8e5b1c9b9b", | 272 | "id": "feb98f97-0e99-4f06-85b0-fe8e5b1c9b9b", | ||
272 | "name": "SPATIAL MODELLING", | 273 | "name": "SPATIAL MODELLING", | ||
273 | "state": "active", | 274 | "state": "active", | ||
274 | "vocabulary_id": null | 275 | "vocabulary_id": null | ||
275 | }, | 276 | }, | ||
276 | { | 277 | { | ||
277 | "display_name": "SPECIES INTERACTION", | 278 | "display_name": "SPECIES INTERACTION", | ||
278 | "id": "29cd5f4e-ca3f-4e27-a8d5-9550a6a8ffb8", | 279 | "id": "29cd5f4e-ca3f-4e27-a8d5-9550a6a8ffb8", | ||
279 | "name": "SPECIES INTERACTION", | 280 | "name": "SPECIES INTERACTION", | ||
280 | "state": "active", | 281 | "state": "active", | ||
281 | "vocabulary_id": null | 282 | "vocabulary_id": null | ||
282 | }, | 283 | }, | ||
283 | { | 284 | { | ||
284 | "display_name": "SPECIES MIGRATION", | 285 | "display_name": "SPECIES MIGRATION", | ||
285 | "id": "eb823eb5-8de6-435e-8531-a7a27c505418", | 286 | "id": "eb823eb5-8de6-435e-8531-a7a27c505418", | ||
286 | "name": "SPECIES MIGRATION", | 287 | "name": "SPECIES MIGRATION", | ||
287 | "state": "active", | 288 | "state": "active", | ||
288 | "vocabulary_id": null | 289 | "vocabulary_id": null | ||
289 | }, | 290 | }, | ||
290 | { | 291 | { | ||
291 | "display_name": "TREEMIG", | 292 | "display_name": "TREEMIG", | ||
292 | "id": "bd8ace98-a206-4aea-9e29-c75b349287c1", | 293 | "id": "bd8ace98-a206-4aea-9e29-c75b349287c1", | ||
293 | "name": "TREEMIG", | 294 | "name": "TREEMIG", | ||
294 | "state": "active", | 295 | "state": "active", | ||
295 | "vocabulary_id": null | 296 | "vocabulary_id": null | ||
296 | } | 297 | } | ||
297 | ], | 298 | ], | ||
298 | "title": "Starter Kit for the TreeMig framework v1 for easy | 299 | "title": "Starter Kit for the TreeMig framework v1 for easy | ||
299 | simulation of spatio-temporal forest dynamics", | 300 | simulation of spatio-temporal forest dynamics", | ||
300 | "type": "dataset", | 301 | "type": "dataset", | ||
301 | "url": null | 302 | "url": null | ||
302 | } | 303 | } |