Changes
On October 5, 2023 at 2:47:28 PM UTC, Helen Moor:
-
Added resource RunModels2.html to Amphibian observation and pond data (Aargau, Switzerland)
f | 1 | { | f | 1 | { |
2 | "author": "[{\"affiliation\": \"WSL\", \"affiliation_02\": | 2 | "author": "[{\"affiliation\": \"WSL\", \"affiliation_02\": | ||
3 | \"Eawag\", \"affiliation_03\": \"\", \"data_credit\": [\"validation\", | 3 | \"Eawag\", \"affiliation_03\": \"\", \"data_credit\": [\"validation\", | ||
4 | \"curation\", \"software\", \"publication\"], \"email\": | 4 | \"curation\", \"software\", \"publication\"], \"email\": | ||
5 | \"helen.moor@wsl.ch\", \"given_name\": \"Helen\", \"identifier\": | 5 | \"helen.moor@wsl.ch\", \"given_name\": \"Helen\", \"identifier\": | ||
6 | \"0000-0002-1340-2039\", \"name\": \"Moor\"}, {\"affiliation\": | 6 | \"0000-0002-1340-2039\", \"name\": \"Moor\"}, {\"affiliation\": | ||
7 | \"Hintermann & Weber\", \"affiliation_02\": \"\", \"affiliation_03\": | 7 | \"Hintermann & Weber\", \"affiliation_02\": \"\", \"affiliation_03\": | ||
8 | \"\", \"data_credit\": [\"collection\", \"validation\", \"curation\", | 8 | \"\", \"data_credit\": [\"collection\", \"validation\", \"curation\", | ||
9 | \"software\", \"supervision\"], \"email\": | 9 | \"software\", \"supervision\"], \"email\": | ||
10 | \"buehler@hintermannweber.ch\", \"given_name\": \"Christoph\", | 10 | \"buehler@hintermannweber.ch\", \"given_name\": \"Christoph\", | ||
11 | \"identifier\": \"\", \"name\": \"B\\u00fchler\"}, {\"affiliation\": | 11 | \"identifier\": \"\", \"name\": \"B\\u00fchler\"}, {\"affiliation\": | ||
12 | \"WSL\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | 12 | \"WSL\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | ||
13 | \"data_credit\": \"supervision\", \"email\": | 13 | \"data_credit\": \"supervision\", \"email\": | ||
14 | \"ariel.bergamini@wsl.ch\", \"given_name\": \"Ariel\", \"identifier\": | 14 | \"ariel.bergamini@wsl.ch\", \"given_name\": \"Ariel\", \"identifier\": | ||
15 | \"0000-0001-8816-1420\", \"name\": \"Bergamini\"}, {\"affiliation\": | 15 | \"0000-0001-8816-1420\", \"name\": \"Bergamini\"}, {\"affiliation\": | ||
16 | \"Eawag\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | 16 | \"Eawag\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | ||
17 | \"data_credit\": \"supervision\", \"email\": | 17 | \"data_credit\": \"supervision\", \"email\": | ||
18 | \"christoph.vorburger@eawag.ch\", \"given_name\": \"Christoph\", | 18 | \"christoph.vorburger@eawag.ch\", \"given_name\": \"Christoph\", | ||
19 | \"identifier\": \"0000-0002-3627-0841\", \"name\": \"Vorburger\"}, | 19 | \"identifier\": \"0000-0002-3627-0841\", \"name\": \"Vorburger\"}, | ||
20 | {\"affiliation\": \"WSL\", \"affiliation_02\": \"\", | 20 | {\"affiliation\": \"WSL\", \"affiliation_02\": \"\", | ||
21 | \"affiliation_03\": \"\", \"data_credit\": \"supervision\", \"email\": | 21 | \"affiliation_03\": \"\", \"data_credit\": \"supervision\", \"email\": | ||
22 | \"rolf.holderegger@wsl.ch\", \"given_name\": \"Rolf\", \"identifier\": | 22 | \"rolf.holderegger@wsl.ch\", \"given_name\": \"Rolf\", \"identifier\": | ||
23 | \"0000-0001-7062-1759\", \"name\": \"Holderegger\"}, {\"affiliation\": | 23 | \"0000-0001-7062-1759\", \"name\": \"Holderegger\"}, {\"affiliation\": | ||
24 | \"info fauna karch\", \"affiliation_02\": \"UZH\", \"affiliation_03\": | 24 | \"info fauna karch\", \"affiliation_02\": \"UZH\", \"affiliation_03\": | ||
25 | \"\", \"data_credit\": \"supervision\", \"email\": | 25 | \"\", \"data_credit\": \"supervision\", \"email\": | ||
26 | \"benedikt.schmidt@uzh.ch\", \"given_name\": \"Benedikt R.\", | 26 | \"benedikt.schmidt@uzh.ch\", \"given_name\": \"Benedikt R.\", | ||
27 | \"identifier\": \"0000-0002-4023-1001\", \"name\": \"Schmidt\"}, | 27 | \"identifier\": \"0000-0002-4023-1001\", \"name\": \"Schmidt\"}, | ||
28 | {\"affiliation\": \"Abteilung Landschaft und Gew\\u00e4sser, Kanton | 28 | {\"affiliation\": \"Abteilung Landschaft und Gew\\u00e4sser, Kanton | ||
29 | Aargau\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | 29 | Aargau\", \"affiliation_02\": \"\", \"affiliation_03\": \"\", | ||
30 | \"data_credit\": \"supervision\", \"email\": \"simon.egger@ag.ch\", | 30 | \"data_credit\": \"supervision\", \"email\": \"simon.egger@ag.ch\", | ||
31 | \"given_name\": \"Simon\", \"identifier\": \"\", \"name\": | 31 | \"given_name\": \"Simon\", \"identifier\": \"\", \"name\": | ||
32 | \"Egger\"}]", | 32 | \"Egger\"}]", | ||
33 | "author_email": null, | 33 | "author_email": null, | ||
34 | "creator_user_id": "305de178-dddb-416d-8758-99b2fbc33678", | 34 | "creator_user_id": "305de178-dddb-416d-8758-99b2fbc33678", | ||
35 | "date": "[{\"date\": \"1999-03-01\", \"date_type\": \"collected\", | 35 | "date": "[{\"date\": \"1999-03-01\", \"date_type\": \"collected\", | ||
36 | \"end_date\": \"2019-08-31\"}, {\"date\": \"2021-03-23\", | 36 | \"end_date\": \"2019-08-31\"}, {\"date\": \"2021-03-23\", | ||
37 | \"date_type\": \"created\", \"end_date\": \"\"}]", | 37 | \"date_type\": \"created\", \"end_date\": \"\"}]", | ||
38 | "doi": "10.16904/envidat.270", | 38 | "doi": "10.16904/envidat.270", | ||
39 | "extras": [ | 39 | "extras": [ | ||
40 | { | 40 | { | ||
41 | "key": "Acknowledgements", | 41 | "key": "Acknowledgements", | ||
42 | "value": "We thank the canton of Aargau for allowing us use | 42 | "value": "We thank the canton of Aargau for allowing us use | ||
43 | their monitoring data. We thank the ETH Board for funding through the | 43 | their monitoring data. We thank the ETH Board for funding through the | ||
44 | Blue-Green Biodiversity (BGB) Initiative (BGB 2020)." | 44 | Blue-Green Biodiversity (BGB) Initiative (BGB 2020)." | ||
45 | }, | 45 | }, | ||
46 | { | 46 | { | ||
47 | "key": "Species", | 47 | "key": "Species", | ||
48 | "value": "Alytes obstetricans, Bombina variegata, Bufo bufo, | 48 | "value": "Alytes obstetricans, Bombina variegata, Bufo bufo, | ||
49 | Epidalea calamita, Hyla aborea, Pelophylax ridibundus, Pelophylax | 49 | Epidalea calamita, Hyla aborea, Pelophylax ridibundus, Pelophylax | ||
50 | esculentus, Pelophylax lessonae, Rana temporaria, Ichthyosaura | 50 | esculentus, Pelophylax lessonae, Rana temporaria, Ichthyosaura | ||
51 | alpestris, Lissotriton helveticus, Lissotriton vulgaris, Triturus | 51 | alpestris, Lissotriton helveticus, Lissotriton vulgaris, Triturus | ||
52 | cristatus" | 52 | cristatus" | ||
53 | } | 53 | } | ||
54 | ], | 54 | ], | ||
55 | "funding": "[{\"grant_number\": \"\", \"institution\": \"BGB | 55 | "funding": "[{\"grant_number\": \"\", \"institution\": \"BGB | ||
56 | Initiative (BGB 2020)\", \"institution_url\": \"\"}]", | 56 | Initiative (BGB 2020)\", \"institution_url\": \"\"}]", | ||
57 | "groups": [], | 57 | "groups": [], | ||
58 | "id": "f6bfbf55-bf8d-4602-bff6-47ee277e9b7f", | 58 | "id": "f6bfbf55-bf8d-4602-bff6-47ee277e9b7f", | ||
59 | "isopen": true, | 59 | "isopen": true, | ||
60 | "language": "en", | 60 | "language": "en", | ||
61 | "license_id": "cc-by-sa", | 61 | "license_id": "cc-by-sa", | ||
62 | "license_title": "Creative Commons Attribution Share-Alike | 62 | "license_title": "Creative Commons Attribution Share-Alike | ||
63 | (CC-BY-SA)", | 63 | (CC-BY-SA)", | ||
64 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 64 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
65 | "maintainer": "{\"affiliation\": \"WSL\", \"email\": | 65 | "maintainer": "{\"affiliation\": \"WSL\", \"email\": | ||
66 | \"helen.moor@wsl.ch\", \"given_name\": \"Helen\", \"identifier\": | 66 | \"helen.moor@wsl.ch\", \"given_name\": \"Helen\", \"identifier\": | ||
67 | \"0000-0002-1340-2039\", \"name\": \"Moor\"}", | 67 | \"0000-0002-1340-2039\", \"name\": \"Moor\"}", | ||
68 | "maintainer_email": null, | 68 | "maintainer_email": null, | ||
69 | "metadata_created": "2021-12-13T13:51:23.128074", | 69 | "metadata_created": "2021-12-13T13:51:23.128074", | ||
n | 70 | "metadata_modified": "2023-10-05T14:47:09.929988", | n | 70 | "metadata_modified": "2023-10-05T14:47:28.874581", |
71 | "name": "amphibian-data-aargau", | 71 | "name": "amphibian-data-aargau", | ||
72 | "notes": "In the canton of Aargau, hundreds of new ponds have been | 72 | "notes": "In the canton of Aargau, hundreds of new ponds have been | ||
73 | constructed since the 1990s to benefit declining amphibian | 73 | constructed since the 1990s to benefit declining amphibian | ||
74 | populations. This dataset consists of monitoring data for all 12 | 74 | populations. This dataset consists of monitoring data for all 12 | ||
75 | pond-breeding amphibian species in the canton of Aargau from 1999 to | 75 | pond-breeding amphibian species in the canton of Aargau from 1999 to | ||
76 | 2019 in 856 ponds, and environmental variables that describe the ponds | 76 | 2019 in 856 ponds, and environmental variables that describe the ponds | ||
77 | and the landscape surrounding the ponds. Species observation data is | 77 | and the landscape surrounding the ponds. Species observation data is | ||
78 | detection/non-detection data from repeat visits during survey years, | 78 | detection/non-detection data from repeat visits during survey years, | ||
79 | during which all potentially suitable ponds in an area were surveyed. | 79 | during which all potentially suitable ponds in an area were surveyed. | ||
80 | Environmental variables describing the ponds are whether the pond has | 80 | Environmental variables describing the ponds are whether the pond has | ||
81 | been newly constructed since 1991 or not, pond age (if constructed), | 81 | been newly constructed since 1991 or not, pond age (if constructed), | ||
82 | elevation a.s.l., the water surface area, and whether the water table | 82 | elevation a.s.l., the water surface area, and whether the water table | ||
83 | fluctuates or not. Environmental variables describing the surroundings | 83 | fluctuates or not. Environmental variables describing the surroundings | ||
84 | of the ponds are the percent area of forest within a circular buffer | 84 | of the ponds are the percent area of forest within a circular buffer | ||
85 | of radius 100m around the pond, the area of large (width \u22656m) | 85 | of radius 100m around the pond, the area of large (width \u22656m) | ||
86 | roads within a circular buffer of radius 1km around the pond, as well | 86 | roads within a circular buffer of radius 1km around the pond, as well | ||
87 | as structural and potential population connectivity, quantified by | 87 | as structural and potential population connectivity, quantified by | ||
88 | three different metrics each.\n\nThe canton of Aargau is the owner of | 88 | three different metrics each.\n\nThe canton of Aargau is the owner of | ||
89 | the monitoring data; the original datafile is only disclosed upon | 89 | the monitoring data; the original datafile is only disclosed upon | ||
90 | request and in consultation with the canton of Aargau.\n\nThe edited | 90 | request and in consultation with the canton of Aargau.\n\nThe edited | ||
91 | dataset contains cleaned observation data for the 12 amphibian | 91 | dataset contains cleaned observation data for the 12 amphibian | ||
92 | species, as well as compiled and edited covariate data and code to fit | 92 | species, as well as compiled and edited covariate data and code to fit | ||
93 | dynamic occupancy models.\n", | 93 | dynamic occupancy models.\n", | ||
n | 94 | "num_resources": 11, | n | 94 | "num_resources": 12, |
95 | "num_tags": 6, | 95 | "num_tags": 6, | ||
96 | "organization": { | 96 | "organization": { | ||
97 | "approval_status": "approved", | 97 | "approval_status": "approved", | ||
98 | "created": "2021-12-01T19:07:26.442187", | 98 | "created": "2021-12-01T19:07:26.442187", | ||
99 | "description": "_An Eawag-WSL collaboration focusing on | 99 | "description": "_An Eawag-WSL collaboration focusing on | ||
100 | Biodiversity at the interface of aquatic and terrestrial | 100 | Biodiversity at the interface of aquatic and terrestrial | ||
101 | ecosystems._\r\n\r\nHotspots of biodiversity can be found both in | 101 | ecosystems._\r\n\r\nHotspots of biodiversity can be found both in | ||
102 | freshwater and terrestrial (blue-green) environments, and especially | 102 | freshwater and terrestrial (blue-green) environments, and especially | ||
103 | at their interface. Freshwater and terrestrial ecosystems are often | 103 | at their interface. Freshwater and terrestrial ecosystems are often | ||
104 | interdependent and rely on resources and substance flows across | 104 | interdependent and rely on resources and substance flows across | ||
105 | land-water boundaries. Many organisms depend on both environments, | 105 | land-water boundaries. Many organisms depend on both environments, | ||
106 | move across the boundaries or spend different life stages in different | 106 | move across the boundaries or spend different life stages in different | ||
107 | habitats. Yet blue-green ecosystems are seldom studied in an | 107 | habitats. Yet blue-green ecosystems are seldom studied in an | ||
108 | integrated manner, despite the fact that they are dramatically | 108 | integrated manner, despite the fact that they are dramatically | ||
109 | impacted by the current decrease of biodiversity associated with | 109 | impacted by the current decrease of biodiversity associated with | ||
110 | habitat fragmentation and loss, invasive species, climate change and | 110 | habitat fragmentation and loss, invasive species, climate change and | ||
111 | other drivers. Research and action to reverse and mitigate the loss of | 111 | other drivers. Research and action to reverse and mitigate the loss of | ||
112 | biodiversity and associated ecosystem functions and services are thus | 112 | biodiversity and associated ecosystem functions and services are thus | ||
113 | crucially needed.\r\nIn order to tackle this scientifically and | 113 | crucially needed.\r\nIn order to tackle this scientifically and | ||
114 | societally urgent topic, the ETH Board has funded a research | 114 | societally urgent topic, the ETH Board has funded a research | ||
115 | initiative on Blue-Green Biodiversity (BGB). Its goal is to strengthen | 115 | initiative on Blue-Green Biodiversity (BGB). Its goal is to strengthen | ||
116 | interdisciplinary biodiversity research within WSL and Eawag, but also | 116 | interdisciplinary biodiversity research within WSL and Eawag, but also | ||
117 | within the whole ETH domain and beyond, to understand and respond to | 117 | within the whole ETH domain and beyond, to understand and respond to | ||
118 | challenges associated to species loss and biodiversity change as | 118 | challenges associated to species loss and biodiversity change as | ||
119 | quickly as possible.", | 119 | quickly as possible.", | ||
120 | "id": "121fdf3a-35c5-4aee-9f88-680d927d5fcd", | 120 | "id": "121fdf3a-35c5-4aee-9f88-680d927d5fcd", | ||
121 | "image_url": "", | 121 | "image_url": "", | ||
122 | "is_organization": true, | 122 | "is_organization": true, | ||
123 | "name": "bgb", | 123 | "name": "bgb", | ||
124 | "state": "active", | 124 | "state": "active", | ||
125 | "title": "BGB", | 125 | "title": "BGB", | ||
126 | "type": "organization" | 126 | "type": "organization" | ||
127 | }, | 127 | }, | ||
128 | "owner_org": "121fdf3a-35c5-4aee-9f88-680d927d5fcd", | 128 | "owner_org": "121fdf3a-35c5-4aee-9f88-680d927d5fcd", | ||
129 | "private": false, | 129 | "private": false, | ||
130 | "publication": "{\"publication_year\": \"2021\", \"publisher\": | 130 | "publication": "{\"publication_year\": \"2021\", \"publisher\": | ||
131 | \"EnviDat\"}", | 131 | \"EnviDat\"}", | ||
132 | "publication_state": "published", | 132 | "publication_state": "published", | ||
133 | "related_datasets": "", | 133 | "related_datasets": "", | ||
134 | "related_publications": | 134 | "related_publications": | ||
135 | "https://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A31825", | 135 | "https://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A31825", | ||
136 | "relationships_as_object": [], | 136 | "relationships_as_object": [], | ||
137 | "relationships_as_subject": [], | 137 | "relationships_as_subject": [], | ||
138 | "resource_type": "dataset", | 138 | "resource_type": "dataset", | ||
139 | "resource_type_general": "dataset", | 139 | "resource_type_general": "dataset", | ||
140 | "resources": [ | 140 | "resources": [ | ||
141 | { | 141 | { | ||
142 | "cache_last_updated": null, | 142 | "cache_last_updated": null, | ||
143 | "cache_url": null, | 143 | "cache_url": null, | ||
144 | "created": "2021-12-23T10:35:41.122294", | 144 | "created": "2021-12-23T10:35:41.122294", | ||
145 | "description": "Description of methods and datasets. Version | 145 | "description": "Description of methods and datasets. Version | ||
146 | 1.", | 146 | 1.", | ||
147 | "doi": "", | 147 | "doi": "", | ||
148 | "format": "PDF", | 148 | "format": "PDF", | ||
149 | "hash": "", | 149 | "hash": "", | ||
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163 | "size": 277486, | 163 | "size": 277486, | ||
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166 | eb1a-f11f-4c9f-85f1-a21cdae52185/download/datadescriptionenvidat.pdf", | 166 | eb1a-f11f-4c9f-85f1-a21cdae52185/download/datadescriptionenvidat.pdf", | ||
167 | "url_type": "upload" | 167 | "url_type": "upload" | ||
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169 | { | 169 | { | ||
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172 | "created": "2021-12-13T15:27:06.206512", | 172 | "created": "2021-12-13T15:27:06.206512", | ||
173 | "description": "This file contains covariate data that does not | 173 | "description": "This file contains covariate data that does not | ||
174 | change over time for 856 ponds: the region the pond is in, whether the | 174 | change over time for 856 ponds: the region the pond is in, whether the | ||
175 | pond is old or new (constructed since 1991), elevation, water surface | 175 | pond is old or new (constructed since 1991), elevation, water surface | ||
176 | area, fluctuations of the water table (yes, no), the percent forest | 176 | area, fluctuations of the water table (yes, no), the percent forest | ||
177 | cover in 100m radius around the pond, the area or large (>6m wide) | 177 | cover in 100m radius around the pond, the area or large (>6m wide) | ||
178 | roads in 1km radius around the pond.", | 178 | roads in 1km radius around the pond.", | ||
179 | "doi": "", | 179 | "doi": "", | ||
180 | "format": "CSV", | 180 | "format": "CSV", | ||
181 | "hash": "", | 181 | "hash": "", | ||
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196 | "size": 57933, | 196 | "size": 57933, | ||
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200 | "url_type": "upload" | 200 | "url_type": "upload" | ||
201 | }, | 201 | }, | ||
202 | { | 202 | { | ||
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205 | "created": "2021-12-13T15:29:06.266320", | 205 | "created": "2021-12-13T15:29:06.266320", | ||
206 | "description": "This file contains covariate data that changes | 206 | "description": "This file contains covariate data that changes | ||
207 | over time for 856 ponds in 21 years (long format): whether or not a | 207 | over time for 856 ponds in 21 years (long format): whether or not a | ||
208 | pond exists in year _t_, the age of constructed ponds in year _t_, | 208 | pond exists in year _t_, the age of constructed ponds in year _t_, | ||
209 | structural connectivity of the pond in year _t_.", | 209 | structural connectivity of the pond in year _t_.", | ||
210 | "doi": "", | 210 | "doi": "", | ||
211 | "format": "CSV", | 211 | "format": "CSV", | ||
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364 | connectivity.", | 364 | connectivity.", | ||
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