Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide

This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.

The interaction of habitat dynamics with species dispersal abilities could generate gradients in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.

Funding Information:

This work was supported by:
  • FNS and ANR (Grant/Award: Project ‘REEFISH’ no. 310030E‐164294)

Related Publications

https://doi.org/10.1111/ecog.04537

Citation:

Donati, Giulia Francesca Azzurra; Parravicini, Valeriano; Leprieur, Fabien; Hagen, Oskar; Gaboriau, Theo; Heine, Christian; Kulbicki, Michel; Rolland, Jonathan; Salamin, Nicolas; Albouy, Camille; Pellissier, Loic (2019). Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide. EnviDat. doi:10.16904/envidat.85.

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Data and Resources

Metadata

Field Values
DOI 10.16904/envidat.85
Publication State Published
Authors
  • Email: giulia.donatifoo(at)usys.ethz.ch ORCID: 0000-0002-5954-3283 Given Name: Giulia Francesca Azzurra Family Name: Donati Affiliation: ETH Zürich Additional Affiliation : WSL DataCRediT: Validation, Curation, Software, Publication
  • Email: valeriano.parravicinifoo(at)gmail.com ORCID: 0000-0002-3408-1625 Given Name: Valeriano Family Name: Parravicini Affiliation: CRIOBE, USR 3278 CNRS-EPHE-UPVD, LABEX ‘CORAIL’, University of Perpignan, 66860 Perpignan, France Additional Affiliation : CESAB-FRB, Immeuble Henri Poincaré, Domaine du Petit Arbois, FR-13857 Aix-en-Provence cedex 3, France DataCRediT: Collection, Validation, Curation, Publication
  • Email: fabien.leprieurfoo(at)umontpellier.fr ORCID: 0000-0001-6869-342X Given Name: Fabien Family Name: Leprieur Affiliation: MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Montpellier, France Additional Affiliation : Institut Universitaire de France, Paris, France DataCRediT: Publication, Supervision
  • Email: oskar.hagenfoo(at)usys.ethz.ch ORCID: 0000-0002-7931-6571 Given Name: Oskar Family Name: Hagen Affiliation: WSL Additional Affiliation : ETH DataCRediT: Validation, Curation, Software
  • Email: theogaboriaufoo(at)gmail.com ORCID: 0000-0001-7530-2204 Given Name: Theo Family Name: Gaboriau Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland. Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland. Additional Affiliation : MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Montpellier, France DataCRediT: Validation, Curation, Software
  • Email: chheifoo(at)mensa.uberspace.de Given Name: Christian Family Name: Heine Affiliation: EarthByte Group, The University of Sydney, Australia. Now: Upstream International New Ventures, Shell International Exploration & Production, The Hague, The Netherlands. DataCRediT: Collection
  • Email: michel.kulbickifoo(at)ird.fr ORCID: 0000-0003-1258-5061 Given Name: Michel Family Name: Kulbicki Affiliation: Institut pour la Recherche en Développement, UR UMR “Entropie” -Labex Corail- Université de Perpignan- 66000-Perpignan- France. DataCRediT: Collection, Supervision
  • Email: jonathan.rollandfoo(at)yahoo.fr ORCID: 0000-0002-7141-0870 Given Name: Jonathan Family Name: Rolland Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland. Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland. DataCRediT: Publication, Supervision
  • Email: nicolas.salaminfoo(at)unil.ch ORCID: 0000-0002-3963-4954 Given Name: Nicolas Family Name: Salamin Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland. Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland. DataCRediT: Publication, Supervision
  • Email: albouycamillefoo(at)gmail.com ORCID: 0000-0003-1629-2389 Given Name: Camille Family Name: Albouy Affiliation: ETH Additional Affiliation : WSL Additional Affiliation : IFREMER, unité Ecologie et Modèles pour l’Halieutique, rue de l’Ile d’Yeu, BP21105, 44311 Nantes cedex 3, France. DataCRediT: Validation, Curation, Software, Publication, Supervision
  • Email: loic.pellissierfoo(at)usys.ethz.ch ORCID: 0000-0002-2289-8259 Given Name: Loic Family Name: Pellissier Affiliation: ETH Additional Affiliation : WSL DataCRediT: Software, Publication, Supervision
Contact Person Given Name: Giulia Francesca Azzurra Family Name: Donati Email: giulia.donatifoo(at)eawag.ch Affiliation: eawag ORCID: 0000-0002-5954-3283
Subtitles
Publication Publisher: EnviDat Year: 2019
Dates
  • Type: Created Date: 2017-01-01
Version 1.0
Type dataset
General Type Dataset
Language English
Location World
Content License ODbL with Database Contents License (DbCL)    [Open Data]
Last Updated September 27, 2023, 14:05 (UTC)
Created September 9, 2019, 14:15 (UTC)

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